RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PFKFB1P16118 471 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 DIXDC1Q155Q3 683 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 JMYQ8N9B5 988 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 SH3RF3Q8TEJ3 882 aaPredicted RBP24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 CD209Q9NNX6 404 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 RBM28Q9NW13 759 aaKnown RBP24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 NAV1Q8NEY1 1877 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 PDE4BQ07343 736 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 LTBP1Q14766 1721 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 FAM47AQ5JRC9 791 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 MPNDQ8N594 471 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 SDF4Q9BRK5 362 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 KLRG2A4D1S0 409 aaPredicted RBP24.37■■□□□ 1.49
CCDC88B-208ENST00000492980 IQCB1Q15051 598 aa24.37■■□□□ 1.49
CCDC88B-208ENST00000492980 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.37■■□□□ 1.49
CCDC88B-208ENST00000492980 NMT2O60551 498 aa24.37■■□□□ 1.49
CCDC88B-208ENST00000492980 ZNF202O95125 648 aa24.37■■□□□ 1.49
CCDC88B-208ENST00000492980 PLEKHA8P1O95397 391 aa24.37■■□□□ 1.49
CCDC88B-208ENST00000492980 IL1R1P14778 569 aa24.37■■□□□ 1.49
CCDC88B-208ENST00000492980 PPP4CP60510 307 aa24.37■■□□□ 1.49
CCDC88B-208ENST00000492980 CRAMP1Q96RY5 1269 aa24.37■■□□□ 1.49
CCDC88B-208ENST00000492980 PODXL2Q9NZ53 605 aa24.37■■□□□ 1.49
CCDC88B-208ENST00000492980 USP5P45974 858 aa24.36■■□□□ 1.49
CCDC88B-208ENST00000492980 TOB1P50616 345 aaPredicted RBP24.36■■□□□ 1.49
CCDC88B-208ENST00000492980 PKN1Q16512 942 aa24.36■■□□□ 1.49
CCDC88B-208ENST00000492980 C12orf60Q5U649 245 aa24.36■■□□□ 1.49
CCDC88B-208ENST00000492980 ERCC4Q92889 916 aaPredicted RBP24.36■■□□□ 1.49
CCDC88B-208ENST00000492980 SHISA4Q96DD7 197 aa24.36■■□□□ 1.49
CCDC88B-208ENST00000492980 ANO10Q9NW15 660 aa24.36■■□□□ 1.49
CCDC88B-208ENST00000492980 PRPF3O43395 683 aaKnown RBP24.35■■□□□ 1.49
CCDC88B-208ENST00000492980 BAG3O95817 575 aa24.35■■□□□ 1.49
CCDC88B-208ENST00000492980 AKAP17AQ02040 695 aaKnown RBP24.35■■□□□ 1.49
CCDC88B-208ENST00000492980 SHC4Q6S5L8 630 aa24.35■■□□□ 1.49
CCDC88B-208ENST00000492980 HPSEQ9Y251 543 aa24.35■■□□□ 1.49
CCDC88B-208ENST00000492980 ANKRD31Q8N7Z5 1873 aa24.35■■□□□ 1.49
CCDC88B-208ENST00000492980 ROBO3Q96MS0 1386 aa24.35■■□□□ 1.49
CCDC88B-208ENST00000492980 A0A087WWV3 80 aa24.35■■□□□ 1.49
CCDC88B-208ENST00000492980 TMTC3Q6ZXV5 915 aa24.35■■□□□ 1.49
CCDC88B-208ENST00000492980 CDK5RAP2Q96SN8 1893 aa24.35■■□□□ 1.49
CCDC88B-208ENST00000492980 FAM237AA0A1B0GTK4 181 aa24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 LDHCP07864 332 aa24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 NR5A1Q13285 461 aa24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 SLC4A8Q2Y0W8 1093 aa24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 TBC1D16Q8TBP0 767 aa24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 RTFDC1Q9BY42 306 aaPredicted RBP24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 KIAA1468Q9P260 1216 aa24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 POLLQ9UGP5 575 aa24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 TSPY2A6NKD2 308 aa24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 CUTAO60888 179 aa24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 OXER1Q8TDS5 423 aa24.34■■□□□ 1.49
CCDC88B-208ENST00000492980 RILPL1Q5EBL4 403 aa24.33■■□□□ 1.49
CCDC88B-208ENST00000492980 RESP18Q5W5W9 173 aa24.33■■□□□ 1.49
CCDC88B-208ENST00000492980 ZNF830Q96NB3 372 aaPredicted RBP24.33■■□□□ 1.49
CCDC88B-208ENST00000492980 NOL10Q9BSC4 688 aaKnown RBP24.33■■□□□ 1.49
CCDC88B-208ENST00000492980 RCSD1Q6JBY9 416 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 PLA2G4DQ86XP0 818 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 TIGD1Q96MW7 591 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 CLIC6Q96NY7 704 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 VPS54Q9P1Q0 977 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 V9GY48 417 aaPredicted RBP24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 NRXN2Q9P2S2 1712 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 CNTNAP5Q8WYK1 1306 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 XBP1P17861 261 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 HMGB2P26583 209 aaKnown RBP24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 SYKP43405 635 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 NT5C2P49902 561 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 ZNF827Q17R98 1081 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 PHF20Q9BVI0 1012 aa24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 TTC12Q9H892 705 aaPredicted RBP24.32■■□□□ 1.48
CCDC88B-208ENST00000492980 hCG_1642624A0A1W2PR95 340 aa24.31■■□□□ 1.48
CCDC88B-208ENST00000492980 ZNF75DP51815 510 aa24.31■■□□□ 1.48
CCDC88B-208ENST00000492980 CTCFLQ8NI51 663 aaPredicted RBP24.31■■□□□ 1.48
CCDC88B-208ENST00000492980 TGFBRAP1Q8WUH2 860 aa24.31■■□□□ 1.48
CCDC88B-208ENST00000492980 DYNLL2Q96FJ2 89 aa24.31■■□□□ 1.48
CCDC88B-208ENST00000492980 DDX60LQ5H9U9 1706 aaKnown RBP24.31■■□□□ 1.48
CCDC88B-208ENST00000492980 OFD1O75665 1012 aa24.31■■□□□ 1.48
CCDC88B-208ENST00000492980 DHX40Q8IX18 779 aaKnown RBP24.31■■□□□ 1.48
CCDC88B-208ENST00000492980 CEP57L1Q8IYX8 460 aa24.31■■□□□ 1.48
CCDC88B-208ENST00000492980 SPC24Q8NBT2 197 aa24.31■■□□□ 1.48
CCDC88B-208ENST00000492980 GOLGA6L19H0YKK7 550 aa24.3■■□□□ 1.48
CCDC88B-208ENST00000492980 PPEF1O14829 653 aaPredicted RBP24.3■■□□□ 1.48
CCDC88B-208ENST00000492980 TMC4Q7Z404 712 aa24.3■■□□□ 1.48
CCDC88B-208ENST00000492980 SRBD1Q8N5C6 995 aaKnown RBP24.3■■□□□ 1.48
CCDC88B-208ENST00000492980 KRI1Q8N9T8 703 aaKnown RBP24.3■■□□□ 1.48
CCDC88B-208ENST00000492980 BTDP43251 543 aa24.29■■□□□ 1.48
CCDC88B-208ENST00000492980 TFAP4Q01664 338 aa24.29■■□□□ 1.48
CCDC88B-208ENST00000492980 CERS3Q8IU89 383 aa24.29■■□□□ 1.48
CCDC88B-208ENST00000492980 TRIM5Q9C035 493 aa24.29■■□□□ 1.48
CCDC88B-208ENST00000492980 GPR75-ASB3A0A0A6YYF3 556 aa24.29■■□□□ 1.48
CCDC88B-208ENST00000492980 KIAA2012Q0VF49 1180 aa24.29■■□□□ 1.48
CCDC88B-208ENST00000492980 SP8Q8IXZ3 490 aa24.29■■□□□ 1.48
CCDC88B-208ENST00000492980 AMOTL1Q8IY63 956 aa24.29■■□□□ 1.48
CCDC88B-208ENST00000492980 IL17RBQ9NRM6 502 aa24.29■■□□□ 1.48
CCDC88B-208ENST00000492980 PCDHB6Q9Y5E3 794 aa24.29■■□□□ 1.48
CCDC88B-208ENST00000492980 GOLGA6L6A8MZA4 724 aa24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 C6orf229H3BNL8 230 aa24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 KRT2P35908 639 aa24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 SARM1Q6SZW1 724 aa24.28■■□□□ 1.48
CCDC88B-208ENST00000492980 MAPKAPK5Q8IW41 473 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms