RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 SIPA1L1O43166 1804 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 CCDC196A0A1B0GTZ2 297 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 TSPY2A6NKD2 308 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 IFIT3O14879 490 aaKnown RBP11.33□□□□□ -0.6
USP54-214ENST00000492357 PFKFB2O60825 505 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 CD2BP2O95400 341 aaKnown RBP11.33□□□□□ -0.6
USP54-214ENST00000492357 HSP90AA1P07900 732 aaKnown RBP11.33□□□□□ -0.6
USP54-214ENST00000492357 RASA1P20936 1047 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 PLCD1P51178 756 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 WTAPQ15007 396 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 SEC23AQ15436 765 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 TMEM67Q5HYA8 995 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 SYNE3Q6ZMZ3 975 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 PNMA8AQ86V59 439 aaPredicted RBP11.33□□□□□ -0.6
USP54-214ENST00000492357 TRIM34Q9BYJ4 488 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 TOMM22Q9NS69 142 aa11.33□□□□□ -0.6
USP54-214ENST00000492357 CNTNAP1P78357 1384 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 CCDC69A6NI79 296 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 RANBP6O60518 1105 aaKnown RBP11.32□□□□□ -0.6
USP54-214ENST00000492357 CDKL5O76039 1030 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 DDAH1O94760 285 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 TSPY3P0CV98 308 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 TSPY8P0CW00 308 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 HMGN5P82970 282 aaKnown RBP11.32□□□□□ -0.6
USP54-214ENST00000492357 CPLX2Q6PUV4 134 aaKnown RBP11.32□□□□□ -0.6
USP54-214ENST00000492357 CYB5R4Q7L1T6 521 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 CRACR2BQ8N4Y2 399 aaPredicted RBP11.32□□□□□ -0.6
USP54-214ENST00000492357 GTF3C6Q969F1 213 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 CSRNP1Q96S65 589 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 LY9Q9HBG7 655 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 PGAP2Q9UHJ9 254 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 HACL1Q9UJ83 578 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 TNKSO95271 1327 aa11.32□□□□□ -0.6
USP54-214ENST00000492357 CYP2D7A0A087X1C5 515 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 CYP2D6P10635 497 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 CPA1P15085 419 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 PDCP20941 246 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 TFAP4Q01664 338 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 NBPF9Q3BBW0 867 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 RRP12Q5JTH9 1297 aaKnown RBP11.31□□□□□ -0.6
USP54-214ENST00000492357 IFIT1BQ5T764 474 aaKnown RBP11.31□□□□□ -0.6
USP54-214ENST00000492357 DCAF15Q66K64 600 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 APOA5Q6Q788 366 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 TMEM179Q6ZVK1 233 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 ZSCAN29Q8IWY8 852 aaPredicted RBP11.31□□□□□ -0.6
USP54-214ENST00000492357 FAM177A1Q8N128 213 aaPredicted RBP11.31□□□□□ -0.6
USP54-214ENST00000492357 SLKQ9H2G2 1235 aaPredicted RBP11.31□□□□□ -0.6
USP54-214ENST00000492357 RBM28Q9NW13 759 aaKnown RBP11.31□□□□□ -0.6
USP54-214ENST00000492357 SAP30BPQ9UHR5 308 aaKnown RBP11.31□□□□□ -0.6
USP54-214ENST00000492357 TPCN1Q9ULQ1 816 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 SLC12A7Q9Y666 1083 aa11.31□□□□□ -0.6
USP54-214ENST00000492357 IGKV6D-41A0A0C4DH26 115 aa11.3□□□□□ -0.6
USP54-214ENST00000492357 DDTLA6NHG4 134 aaPredicted RBP11.3□□□□□ -0.6
USP54-214ENST00000492357 ZBTB43O43298 467 aa11.3□□□□□ -0.6
USP54-214ENST00000492357 DDNO94850 711 aaPredicted RBP11.3□□□□□ -0.6
USP54-214ENST00000492357 PDIA3P30101 505 aaKnown RBP11.3□□□□□ -0.6
USP54-214ENST00000492357 SHMT1P34896 483 aa11.3□□□□□ -0.6
USP54-214ENST00000492357 ME3Q16798 604 aa11.3□□□□□ -0.6
USP54-214ENST00000492357 SUPT20HL1Q3ZLR7 823 aa11.3□□□□□ -0.6
USP54-214ENST00000492357 CATIPQ7Z7H3 387 aa11.3□□□□□ -0.6
USP54-214ENST00000492357 ENAHQ8N8S7 591 aaPredicted RBP11.3□□□□□ -0.6
USP54-214ENST00000492357 KANSL2Q9H9L4 492 aa11.3□□□□□ -0.6
USP54-214ENST00000492357 VEZTQ9HBM0 779 aa11.3□□□□□ -0.6
USP54-214ENST00000492357 RBM27Q9P2N5 1060 aaKnown RBP11.3□□□□□ -0.6
USP54-214ENST00000492357 TACC3Q9Y6A5 838 aa11.3□□□□□ -0.6
USP54-214ENST00000492357 KLF18A0A0U1RQI7 1052 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 CLRN2A0PK11 232 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 UNCXA6NJT0 531 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 TCP10L2B9ZVM9 353 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 TOP1P11387 765 aaKnown RBP11.29□□□□□ -0.6
USP54-214ENST00000492357 SMARCA1P28370 1054 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 KIF5BP33176 963 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 DDIT3P35638 169 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 GNAQP50148 359 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 NUCB2P80303 420 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 RASA3Q14644 834 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 CERKLQ49MI3 558 aaPredicted RBP11.29□□□□□ -0.6
USP54-214ENST00000492357 TBC1D10BQ4KMP7 808 aaPredicted RBP11.29□□□□□ -0.6
USP54-214ENST00000492357 RCSD1Q6JBY9 416 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 NFXL1Q6ZNB6 911 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 SH3BP5LQ7L8J4 393 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 SAMD7Q7Z3H4 446 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 SMARCC2Q8TAQ2 1214 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 MKL1Q969V6 931 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 DYNLL2Q96FJ2 89 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 TEPSINQ96N21 525 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 LZTS2Q9BRK4 669 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 CABP5Q9NP86 173 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 CHMP5Q9NZZ3 219 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 NYAP2Q9P242 653 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 PCDHAC2Q9Y5I4 1007 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 STK36Q9NRP7 1315 aa11.29□□□□□ -0.6
USP54-214ENST00000492357 GOLGA8BA8MQT2 603 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 PRDM1O75626 825 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 TTLL1O95922 423 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 ASNSP08243 561 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 EPS15P42566 896 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 METAP2P50579 478 aaKnown RBP eCLIP11.28□□□□□ -0.6
USP54-214ENST00000492357 CACNB3P54284 484 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 APOBRQ0VD83 1088 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms