RNA–Protein interactions for RNA: ENST00000492170.1

MRPL55-231, Transcript of mitochondrial ribosomal protein L55, human

TSL 5

Gene MRPL55, Length 241 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-231	ENST00000492170	MYO5A	Q9Y4I1	1855 aa	Known RBP	18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170		H0YGN5	161 aa		18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	FARP2	O94887	1054 aa	Predicted RBP	18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	GDF11	O95390	407 aa		18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	USP5	P45974	858 aa		18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	MAP3K12	Q12852	859 aa		18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	HSP90AB4P	Q58FF6	505 aa		18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	TMED8	Q6PL24	325 aa	Predicted RBP	18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	MAGEB6	Q8N7X4	407 aa		18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	MIGA1	Q8NAN2	632 aa		18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	PANK1	Q8TE04	598 aa		18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	DPF3	Q92784	378 aa		18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	ZBTB21	Q9ULJ3	1066 aa		18.69	■□□□□ 0.58
MRPL55-231	ENST00000492170	C19orf81	C9J6K1	198 aa		18.68	■□□□□ 0.58
MRPL55-231	ENST00000492170	SGPL1	O95470	568 aa		18.68	■□□□□ 0.58
MRPL55-231	ENST00000492170	MS4A1	P11836	297 aa		18.68	■□□□□ 0.58
MRPL55-231	ENST00000492170	CAPN2	P17655	700 aa		18.68	■□□□□ 0.58
MRPL55-231	ENST00000492170	UBE2Q1	Q7Z7E8	422 aa		18.68	■□□□□ 0.58
MRPL55-231	ENST00000492170	USP17L10	C9JJH3	530 aa		18.67	■□□□□ 0.58
MRPL55-231	ENST00000492170	HOXA7	P31268	230 aa	Predicted RBP	18.67	■□□□□ 0.58
MRPL55-231	ENST00000492170	JAG1	P78504	1218 aa		18.67	■□□□□ 0.58
MRPL55-231	ENST00000492170	MORF4L1	Q9UBU8	362 aa		18.67	■□□□□ 0.58
MRPL55-231	ENST00000492170	COLQ	Q9Y215	455 aa	Predicted RBP	18.67	■□□□□ 0.58
MRPL55-231	ENST00000492170	NDUFB9	Q9Y6M9	179 aa		18.67	■□□□□ 0.58
MRPL55-231	ENST00000492170	CEP290	O15078	2479 aa		18.67	■□□□□ 0.58
MRPL55-231	ENST00000492170	SHROOM1	Q2M3G4	852 aa	Predicted RBP	18.66	■□□□□ 0.58
MRPL55-231	ENST00000492170	DEFB118	Q96PH6	123 aa		18.66	■□□□□ 0.58
MRPL55-231	ENST00000492170	ANTXR1	Q9H6X2	564 aa		18.66	■□□□□ 0.58
MRPL55-231	ENST00000492170	TFRC	P02786	760 aa	Known RBP	18.65	■□□□□ 0.58
MRPL55-231	ENST00000492170	HMGCR	P04035	888 aa		18.65	■□□□□ 0.58
MRPL55-231	ENST00000492170	HERVK_113	P62684	666 aa		18.65	■□□□□ 0.58
MRPL55-231	ENST00000492170	TTF1	Q15361	905 aa	Predicted RBP	18.65	■□□□□ 0.58
MRPL55-231	ENST00000492170	IL1RAPL2	Q9NP60	686 aa		18.65	■□□□□ 0.58
MRPL55-231	ENST00000492170	PAK6	Q9NQU5	681 aa	Predicted RBP	18.65	■□□□□ 0.58
MRPL55-231	ENST00000492170	SERPINB13	Q9UIV8	391 aa		18.65	■□□□□ 0.58
MRPL55-231	ENST00000492170	DOCK3	Q8IZD9	2030 aa		18.65	■□□□□ 0.58
MRPL55-231	ENST00000492170	GH2	P01242	217 aa		18.64	■□□□□ 0.57
MRPL55-231	ENST00000492170	USP17L2	Q6R6M4	530 aa		18.64	■□□□□ 0.57
MRPL55-231	ENST00000492170	TTC6	Q86TZ1	520 aa		18.64	■□□□□ 0.57
MRPL55-231	ENST00000492170	RHPN1	Q8TCX5	695 aa		18.64	■□□□□ 0.57
MRPL55-231	ENST00000492170	GTF3C2	Q8WUA4	911 aa	Predicted RBP	18.64	■□□□□ 0.57
MRPL55-231	ENST00000492170	P2RX7	Q99572	595 aa	Known RBP	18.64	■□□□□ 0.57
MRPL55-231	ENST00000492170	EHD4	Q9H223	541 aa		18.64	■□□□□ 0.57
MRPL55-231	ENST00000492170	MYH1	P12882	1939 aa		18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	HMMR	O75330	724 aa		18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	FXR1	P51114	621 aa	Known RBP eCLIP	18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	TATDN1	Q6P1N9	297 aa		18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	CLASRP	Q8N2M8	674 aa	Known RBP	18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	GPRC5A	Q8NFJ5	357 aa		18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	KIF1BP	Q96EK5	621 aa		18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	FEZ1	Q99689	392 aa		18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	GJD2	Q9UKL4	321 aa		18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	NR2E3	Q9Y5X4	410 aa		18.63	■□□□□ 0.57
MRPL55-231	ENST00000492170	CHRDL2	Q6WN34	429 aa		18.62	■□□□□ 0.57
MRPL55-231	ENST00000492170	RPAP2	Q8IXW5	612 aa	Predicted RBP	18.62	■□□□□ 0.57
MRPL55-231	ENST00000492170	SOCS4	Q8WXH5	440 aa		18.62	■□□□□ 0.57
MRPL55-231	ENST00000492170	CRISPLD2	Q9H0B8	497 aa		18.62	■□□□□ 0.57
MRPL55-231	ENST00000492170	TXNRD2	Q9NNW7	524 aa		18.62	■□□□□ 0.57
MRPL55-231	ENST00000492170	DDX19B	Q9UMR2	479 aa		18.62	■□□□□ 0.57
MRPL55-231	ENST00000492170	MAGEB6P1	A0A0J9YX57	407 aa		18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	APBB1	O00213	710 aa		18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	IFIT2	P09913	472 aa	Known RBP	18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	MAPK4	P31152	587 aa		18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	PDE3A	Q14432	1141 aa		18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	CERKL	Q49MI3	558 aa	Predicted RBP	18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	CCAR1	Q8IX12	1150 aa	Known RBP	18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	C12orf42	Q96LP6	360 aa		18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	NUDT12	Q9BQG2	462 aa		18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	RIOK1	Q9BRS2	568 aa	Known RBP	18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	EMILIN3	Q9NT22	766 aa		18.61	■□□□□ 0.57
MRPL55-231	ENST00000492170	RPTOR	Q8N122	1335 aa		18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	PDE6A	P16499	860 aa		18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	USP14	P54578	494 aa		18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	ERVK-9	P63128	1117 aa		18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	ERVK-24	P63145	666 aa		18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	RAB3GAP1	Q15042	981 aa		18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	ABCB5	Q2M3G0	1257 aa		18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	SLC9C2	Q5TAH2	1124 aa		18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	DNAJC2	Q99543	621 aa	Known RBP	18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	PAGR1	Q9BTK6	254 aa		18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	CRNKL1	Q9BZJ0	848 aa	Known RBP	18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	CHMP4B	Q9H444	224 aa	Known RBP	18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	HMX1	Q9NP08	348 aa	Predicted RBP	18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	CABP5	Q9NP86	173 aa		18.6	■□□□□ 0.57
MRPL55-231	ENST00000492170	TRIOBP	Q9H2D6	2365 aa		18.59	■□□□□ 0.57
MRPL55-231	ENST00000492170	POLR3D	P05423	398 aa	Predicted RBP	18.59	■□□□□ 0.57
MRPL55-231	ENST00000492170	CYP2B6	P20813	491 aa		18.59	■□□□□ 0.57
MRPL55-231	ENST00000492170	ZYX	Q15942	572 aa	Known RBP	18.59	■□□□□ 0.57
MRPL55-231	ENST00000492170	ANKLE1	Q8NAG6	615 aa		18.59	■□□□□ 0.57
MRPL55-231	ENST00000492170	TRIB2	Q92519	343 aa		18.59	■□□□□ 0.57
MRPL55-231	ENST00000492170	RBPJL	Q9UBG7	517 aa		18.59	■□□□□ 0.57
MRPL55-231	ENST00000492170	COG6	Q9Y2V7	657 aa		18.59	■□□□□ 0.57
MRPL55-231	ENST00000492170	DDX60L	Q5H9U9	1706 aa	Known RBP	18.58	■□□□□ 0.57
MRPL55-231	ENST00000492170	USP17L15	C9J2P7	530 aa		18.58	■□□□□ 0.56
MRPL55-231	ENST00000492170	USP17L13	C9JLJ4	530 aa		18.58	■□□□□ 0.56
MRPL55-231	ENST00000492170	USP17L11	C9JVI0	530 aa		18.58	■□□□□ 0.56
MRPL55-231	ENST00000492170	USP17L18	D6R9N7	530 aa		18.58	■□□□□ 0.56
MRPL55-231	ENST00000492170	USP17L22	D6RA61	530 aa		18.58	■□□□□ 0.56

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms