RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	LACTB	P83111	547 aa	Predicted RBP	10.82	□□□□□ -0.68
USP4-213	ENST00000488520	PDE3A	Q14432	1141 aa		10.82	□□□□□ -0.68
USP4-213	ENST00000488520	MTFR1	Q15390	333 aa		10.82	□□□□□ -0.68
USP4-213	ENST00000488520	ITPRIP	Q8IWB1	547 aa		10.82	□□□□□ -0.68
USP4-213	ENST00000488520	SUCLG2	Q96I99	432 aa		10.82	□□□□□ -0.68
USP4-213	ENST00000488520	SNCAIP	Q9Y6H5	919 aa		10.82	□□□□□ -0.68
USP4-213	ENST00000488520	DOCK1	Q14185	1865 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	GNAI3	P08754	354 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	CETP	P11597	493 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	RRP1	P56182	461 aa	Known RBP	10.81	□□□□□ -0.68
USP4-213	ENST00000488520	AMHR2	Q16671	573 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	MORN1	Q5T089	497 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	MIGA2	Q7L4E1	593 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	ERO1B	Q86YB8	467 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	SCUBE3	Q8IX30	993 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	DPF3	Q92784	378 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	TEKT1	Q969V4	418 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.81	□□□□□ -0.68
USP4-213	ENST00000488520	TMOD2	Q9NZR1	351 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	CPA4	Q9UI42	421 aa		10.81	□□□□□ -0.68
USP4-213	ENST00000488520	RANBP2	P49792	3224 aa	Known RBP	10.81	□□□□□ -0.68
USP4-213	ENST00000488520	UBTFL1	P0CB47	393 aa	Predicted RBP	10.8	□□□□□ -0.68
USP4-213	ENST00000488520	CTGF	P29279	349 aa		10.8	□□□□□ -0.68
USP4-213	ENST00000488520	PSMC4	P43686	418 aa		10.8	□□□□□ -0.68
USP4-213	ENST00000488520	SNAPC2	Q13487	334 aa		10.8	□□□□□ -0.68
USP4-213	ENST00000488520	LRRC24	Q50LG9	513 aa		10.8	□□□□□ -0.68
USP4-213	ENST00000488520	TMEM57	Q8N5G2	664 aa		10.8	□□□□□ -0.68
USP4-213	ENST00000488520	KAZALD1	Q96I82	304 aa		10.8	□□□□□ -0.68
USP4-213	ENST00000488520	RIPOR2	Q9Y4F9	1068 aa		10.8	□□□□□ -0.68
USP4-213	ENST00000488520	CDK5RAP2	Q96SN8	1893 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	ADH1B	P00325	375 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	NEFL	P07196	543 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	NBPF7	P0C2Y1	421 aa	Predicted RBP	10.79	□□□□□ -0.68
USP4-213	ENST00000488520	INPP5B	P32019	993 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	PPIL2	Q13356	520 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	CAVIN4	Q5BKX8	364 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	METTL24	Q5JXM2	366 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	FBXO33	Q7Z6M2	555 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	PANK1	Q8TE04	598 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	SHISA4	Q96DD7	197 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	REPIN1	Q9BWE0	567 aa	Known RBP	10.79	□□□□□ -0.68
USP4-213	ENST00000488520	DDX19B	Q9UMR2	479 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	MROH5	Q6ZUA9	1318 aa		10.79	□□□□□ -0.68
USP4-213	ENST00000488520	COL6A3	P12111	3177 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	PDHX	O00330	501 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	KDM4A	O75164	1064 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	FMNL1	O95466	1100 aa	Predicted RBP	10.78	□□□□□ -0.68
USP4-213	ENST00000488520	HDLBP	Q00341	1268 aa	Known RBP	10.78	□□□□□ -0.68
USP4-213	ENST00000488520	TCP10	Q12799	353 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	C17orf99	Q6UX52	265 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	FAM83A	Q86UY5	434 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	KLHDC4	Q8TBB5	520 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	RAET1E	Q8TD07	263 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	TBC1D22A	Q8WUA7	517 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	TRIM47	Q96LD4	638 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	ZNF341	Q9BYN7	854 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	BICC1	Q9H694	974 aa	Known RBP	10.78	□□□□□ -0.68
USP4-213	ENST00000488520	ZCCHC17	Q9NP64	241 aa	Known RBP	10.78	□□□□□ -0.68
USP4-213	ENST00000488520	BIN2	Q9UBW5	565 aa	Predicted RBP	10.78	□□□□□ -0.68
USP4-213	ENST00000488520	COG6	Q9Y2V7	657 aa		10.78	□□□□□ -0.68
USP4-213	ENST00000488520	MYO5A	Q9Y4I1	1855 aa	Known RBP	10.77	□□□□□ -0.69
USP4-213	ENST00000488520	TRIM66	O15016	1216 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	GNRH1	P01148	92 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	GNAI2	P04899	355 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	CCL5	P13501	91 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	GRK4	P32298	578 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	PRMT2	P55345	433 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	PPAT	Q06203	517 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	MVP	Q14764	893 aa	Known RBP	10.77	□□□□□ -0.69
USP4-213	ENST00000488520	DCAF15	Q66K64	600 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	APOBEC3H	Q6NTF7	200 aa	Known RBP	10.77	□□□□□ -0.69
USP4-213	ENST00000488520	HOOK2	Q96ED9	719 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	ZDHHC15	Q96MV8	337 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	USP44	Q9H0E7	712 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	SRRD	Q9UH36	339 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	MYPN	Q86TC9	1320 aa		10.77	□□□□□ -0.69
USP4-213	ENST00000488520	PDE8B	O95263	885 aa		10.76	□□□□□ -0.69
USP4-213	ENST00000488520	HOXD10	P28358	340 aa		10.76	□□□□□ -0.69
USP4-213	ENST00000488520	USP46	P62068	366 aa		10.76	□□□□□ -0.69
USP4-213	ENST00000488520	RNF208	Q9H0X6	261 aa		10.76	□□□□□ -0.69
USP4-213	ENST00000488520	TNN	Q9UQP3	1299 aa		10.76	□□□□□ -0.69
USP4-213	ENST00000488520	SLC27A5	Q9Y2P5	690 aa		10.76	□□□□□ -0.69
USP4-213	ENST00000488520	PLXNB2	O15031	1838 aa		10.76	□□□□□ -0.69
USP4-213	ENST00000488520	MAST3	O60307	1309 aa		10.76	□□□□□ -0.69
USP4-213	ENST00000488520	ZBTB7B	O15156	539 aa	Predicted RBP	10.75	□□□□□ -0.69
USP4-213	ENST00000488520	SSTR3	P32745	418 aa	Predicted RBP	10.75	□□□□□ -0.69
USP4-213	ENST00000488520	PRKCZ	Q05513	592 aa		10.75	□□□□□ -0.69
USP4-213	ENST00000488520	FKBP1C	Q5VVH2	108 aa		10.75	□□□□□ -0.69
USP4-213	ENST00000488520	HHIPL2	Q6UWX4	724 aa		10.75	□□□□□ -0.69
USP4-213	ENST00000488520	ANKRD23	Q86SG2	305 aa		10.75	□□□□□ -0.69
USP4-213	ENST00000488520	ANKRD44	Q8N8A2	993 aa		10.75	□□□□□ -0.69
USP4-213	ENST00000488520	VGLL2	Q8N8G2	317 aa		10.75	□□□□□ -0.69
USP4-213	ENST00000488520	FAM151A	Q8WW52	585 aa		10.75	□□□□□ -0.69
USP4-213	ENST00000488520	SPSB2	Q99619	263 aa		10.75	□□□□□ -0.69
USP4-213	ENST00000488520	GABRQ	Q9UN88	632 aa		10.75	□□□□□ -0.69
USP4-213	ENST00000488520	ADGRA2	Q96PE1	1338 aa		10.75	□□□□□ -0.69
USP4-213	ENST00000488520	RPAP1	Q9BWH6	1393 aa	Predicted RBP	10.75	□□□□□ -0.69
USP4-213	ENST00000488520	DDX60L	Q5H9U9	1706 aa	Known RBP	10.75	□□□□□ -0.69
USP4-213	ENST00000488520	S1PR4	O95977	384 aa		10.74	□□□□□ -0.69
USP4-213	ENST00000488520	GJB1	P08034	283 aa		10.74	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms