RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 ANKRD18AQ8IVF6 992 aa8.6□□□□□ -1.03
HDAC3-209ENST00000486618 ZBTB38Q8NAP3 1195 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-209ENST00000486618 SEC31BQ9NQW1 1179 aa8.6□□□□□ -1.03
HDAC3-209ENST00000486618 RIPOR2Q9Y4F9 1068 aa8.6□□□□□ -1.03
HDAC3-209ENST00000486618 TRIM17Q9Y577 477 aa8.6□□□□□ -1.03
HDAC3-209ENST00000486618 MANSC4A6NHS7 340 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-209ENST00000486618 WNT10BO00744 389 aa8.59□□□□□ -1.03
HDAC3-209ENST00000486618 PDE8AO60658 829 aa8.59□□□□□ -1.03
HDAC3-209ENST00000486618 PTPN12Q05209 780 aaKnown RBP8.59□□□□□ -1.03
HDAC3-209ENST00000486618 APOBEC3FQ8IUX4 373 aaKnown RBP8.59□□□□□ -1.03
HDAC3-209ENST00000486618 SPATA32Q96LK8 384 aa8.59□□□□□ -1.03
HDAC3-209ENST00000486618 MYH16Q9H6N6 1097 aa8.59□□□□□ -1.03
HDAC3-209ENST00000486618 NXF1Q9UBU9 619 aaKnown RBP8.59□□□□□ -1.03
HDAC3-209ENST00000486618 SERPINA10Q9UK55 444 aa8.59□□□□□ -1.03
HDAC3-209ENST00000486618 LAS1LQ9Y4W2 734 aaKnown RBP8.59□□□□□ -1.03
HDAC3-209ENST00000486618 SOBPA7XYQ1 873 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 PCCAP05165 728 aaPredicted RBP8.58□□□□□ -1.04
HDAC3-209ENST00000486618 BMP2P12643 396 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 RBM10P98175 930 aaKnown RBP8.58□□□□□ -1.04
HDAC3-209ENST00000486618 KRT24Q2M2I5 525 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 NBPF20Q3BBV1 942 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 LDLRAD1Q5T700 205 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 STRIP1Q5VSL9 837 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 OTUD7BQ6GQQ9 843 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 RETREG2Q8NC44 543 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 CCDC191Q8NCU4 936 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 ERO1AQ96HE7 468 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 CDC5LQ99459 802 aaKnown RBP8.58□□□□□ -1.04
HDAC3-209ENST00000486618 ANP32EQ9BTT0 268 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 PGPEP1Q9NXJ5 209 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 ANGEL1Q9UNK9 670 aaKnown RBP8.58□□□□□ -1.04
HDAC3-209ENST00000486618 SCAF8Q9UPN6 1271 aaKnown RBP8.58□□□□□ -1.04
HDAC3-209ENST00000486618 CEP290O15078 2479 aa8.58□□□□□ -1.04
HDAC3-209ENST00000486618 COL4A1P02462 1669 aa8.57□□□□□ -1.04
HDAC3-209ENST00000486618 PPP1R12BO60237 982 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-209ENST00000486618 SMARCA5O60264 1052 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-209ENST00000486618 UPP2O95045 317 aa8.57□□□□□ -1.04
HDAC3-209ENST00000486618 ZBTB48P10074 688 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-209ENST00000486618 IRF5Q13568 498 aa8.57□□□□□ -1.04
HDAC3-209ENST00000486618 PRKG1Q13976 671 aa8.57□□□□□ -1.04
HDAC3-209ENST00000486618 DACT2Q5SW24 774 aa8.57□□□□□ -1.04
HDAC3-209ENST00000486618 OTOP1Q7RTM1 612 aa8.57□□□□□ -1.04
HDAC3-209ENST00000486618 CCDC97Q96F63 343 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-209ENST00000486618 COA1Q9GZY4 146 aa8.57□□□□□ -1.04
HDAC3-209ENST00000486618 R3HDMLQ9H3Y0 253 aa8.57□□□□□ -1.04
HDAC3-209ENST00000486618 CWC25Q9NXE8 425 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-209ENST00000486618 MED23Q9ULK4 1368 aa8.57□□□□□ -1.04
HDAC3-209ENST00000486618 UNCXA6NJT0 531 aa8.56□□□□□ -1.04
HDAC3-209ENST00000486618 DHX9Q08211 1270 aaKnown RBP8.56□□□□□ -1.04
HDAC3-209ENST00000486618 CBLBQ13191 982 aa8.56□□□□□ -1.04
HDAC3-209ENST00000486618 ARHGEF6Q15052 776 aa8.56□□□□□ -1.04
HDAC3-209ENST00000486618 DUSP27Q5VZP5 1158 aa8.56□□□□□ -1.04
HDAC3-209ENST00000486618 Q6ZVU0 165 aa8.56□□□□□ -1.04
HDAC3-209ENST00000486618 BANK1Q8NDB2 785 aa8.56□□□□□ -1.04
HDAC3-209ENST00000486618 CCDC85AQ96PX6 553 aaPredicted RBP8.56□□□□□ -1.04
HDAC3-209ENST00000486618 MYD88Q99836 296 aa8.56□□□□□ -1.04
HDAC3-209ENST00000486618 BSDC1Q9NW68 430 aaPredicted RBP8.56□□□□□ -1.04
HDAC3-209ENST00000486618 PTPN22Q9Y2R2 807 aa8.56□□□□□ -1.04
HDAC3-209ENST00000486618 RBBP6Q7Z6E9 1792 aaKnown RBP8.56□□□□□ -1.04
HDAC3-209ENST00000486618 TRIOBPQ9H2D6 2365 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 SASH1O94885 1247 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 DDX58O95786 925 aaKnown RBP8.55□□□□□ -1.04
HDAC3-209ENST00000486618 CCT4P50991 539 aaKnown RBP8.55□□□□□ -1.04
HDAC3-209ENST00000486618 FXR1P51114 621 aaKnown RBP eCLIP8.55□□□□□ -1.04
HDAC3-209ENST00000486618 MAP3K11Q16584 847 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 SUPT20HL1Q3ZLR7 823 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 TTLL5Q6EMB2 1281 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 NPAS3Q8IXF0 933 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 MTMR14Q8NCE2 650 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 ARMC5Q96C12 935 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 TSEN34Q9BSV6 310 aaKnown RBP8.55□□□□□ -1.04
HDAC3-209ENST00000486618 EFCC1Q9HA90 598 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 MINPP1Q9UNW1 487 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 LEMD3Q9Y2U8 911 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 PPP2R3BQ9Y5P8 575 aa8.55□□□□□ -1.04
HDAC3-209ENST00000486618 COL1A1P02452 1464 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-209ENST00000486618 ZBBXA8MT70 800 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 WIPF1O43516 503 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 MAN1A2O60476 641 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 FBXO45P0C2W1 286 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 CTSWP56202 376 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 SP3Q02447 781 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 DLGAP5Q15398 846 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 NBPF11Q86T75 865 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 KIAA0825Q8IV33 1275 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 CD99L2Q8TCZ2 262 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 RUNDC1Q96C34 613 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 WNK4Q96J92 1243 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 METTL22Q9BUU2 404 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-209ENST00000486618 MXD3Q9BW11 206 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 ANKRD2Q9GZV1 360 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 DEFB129Q9H1M3 183 aa8.54□□□□□ -1.04
HDAC3-209ENST00000486618 PHAXQ9H814 394 aaKnown RBP8.54□□□□□ -1.04
HDAC3-209ENST00000486618 MYH3P11055 1940 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 ESPNB1AK53 854 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 HMGB1P1B2RPK0 211 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-209ENST00000486618 IGF2BP3O00425 579 aaKnown RBP eCLIP8.53□□□□□ -1.04
HDAC3-209ENST00000486618 MYO1BO43795 1136 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 GPR37L1O60883 481 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 EN2P19622 333 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms