RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TRIM75PA6NK02 468 aa17.69■□□□□ 0.42
USP4-212ENST00000486549 GSG1L2A8MUP6 293 aa17.69■□□□□ 0.42
USP4-212ENST00000486549 USP17L12C9JPN9 530 aa17.69■□□□□ 0.42
USP4-212ENST00000486549 USP17L21D6R901 530 aa17.69■□□□□ 0.42
USP4-212ENST00000486549 GPR25O00155 361 aa17.69■□□□□ 0.42
USP4-212ENST00000486549 GNAT2P19087 354 aa17.69■□□□□ 0.42
USP4-212ENST00000486549 JAG1P78504 1218 aa17.69■□□□□ 0.42
USP4-212ENST00000486549 DYNLL2Q96FJ2 89 aa17.69■□□□□ 0.42
USP4-212ENST00000486549 KCNH4Q9UQ05 1017 aa17.69■□□□□ 0.42
USP4-212ENST00000486549 A0A0D9SFI3 127 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 SMIM22K7EJ46 135 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 FKTNO75072 461 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 SHMT1P34896 483 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 TDO2P48775 406 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 NMIQ13287 307 aaPredicted RBP17.68■□□□□ 0.42
USP4-212ENST00000486549 TTC22Q5TAA0 569 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 C12orf60Q5U649 245 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 TATDN1Q6P1N9 297 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 CTR9Q6PD62 1173 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 CENPQQ7L2Z9 268 aaPredicted RBP17.68■□□□□ 0.42
USP4-212ENST00000486549 FAM43AQ8N2R8 423 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 SLC44A5Q8NCS7 719 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 ZNF296Q8WUU4 475 aaPredicted RBP17.68■□□□□ 0.42
USP4-212ENST00000486549 CCDC136Q96JN2 1154 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 FAM227BQ96M60 508 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 EPB41L4AQ9HCS5 686 aaPredicted RBP17.68■□□□□ 0.42
USP4-212ENST00000486549 ZBTB21Q9ULJ3 1066 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 AFG3L2Q9Y4W6 797 aa17.68■□□□□ 0.42
USP4-212ENST00000486549 USP17L5A8MUK1 530 aa17.67■□□□□ 0.42
USP4-212ENST00000486549 CXCL11O14625 94 aa17.67■□□□□ 0.42
USP4-212ENST00000486549 GH2P01242 217 aa17.67■□□□□ 0.42
USP4-212ENST00000486549 ASNSP08243 561 aa17.67■□□□□ 0.42
USP4-212ENST00000486549 GABPAQ06546 454 aa17.67■□□□□ 0.42
USP4-212ENST00000486549 CERKLQ49MI3 558 aaPredicted RBP17.67■□□□□ 0.42
USP4-212ENST00000486549 GADL1Q6ZQY3 521 aa17.67■□□□□ 0.42
USP4-212ENST00000486549 R3HDMLQ9H3Y0 253 aa17.67■□□□□ 0.42
USP4-212ENST00000486549 ARPP21Q9UBL0 812 aaPredicted RBP17.67■□□□□ 0.42
USP4-212ENST00000486549 MINDY4BA8MYZ0 360 aa17.66■□□□□ 0.42
USP4-212ENST00000486549 PATL2C9JE40 543 aaKnown RBP17.66■□□□□ 0.42
USP4-212ENST00000486549 BTBD19C9JJ37 291 aa17.66■□□□□ 0.42
USP4-212ENST00000486549 MPHOSPH10O00566 681 aaKnown RBP17.66■□□□□ 0.42
USP4-212ENST00000486549 GSPT1P15170 499 aaKnown RBP17.66■□□□□ 0.42
USP4-212ENST00000486549 SDSP20132 328 aa17.66■□□□□ 0.42
USP4-212ENST00000486549 SPP2Q13103 211 aa17.66■□□□□ 0.42
USP4-212ENST00000486549 TAF1CQ15572 869 aaPredicted RBP17.66■□□□□ 0.42
USP4-212ENST00000486549 ABCB5Q2M3G0 1257 aa17.66■□□□□ 0.42
USP4-212ENST00000486549 STK11IPQ8N1F8 1099 aa17.66■□□□□ 0.42
USP4-212ENST00000486549 AS3MTQ9HBK9 375 aa17.66■□□□□ 0.42
USP4-212ENST00000486549 HELLSQ9NRZ9 838 aa17.66■□□□□ 0.42
USP4-212ENST00000486549 A0A0G2JLL6 359 aaPredicted RBP17.65■□□□□ 0.42
USP4-212ENST00000486549 CRHR2Q13324 411 aa17.65■□□□□ 0.42
USP4-212ENST00000486549 RAB3GAP1Q15042 981 aa17.65■□□□□ 0.42
USP4-212ENST00000486549 ARHGEF6Q15052 776 aa17.65■□□□□ 0.42
USP4-212ENST00000486549 GIMAP6Q6P9H5 292 aa17.65■□□□□ 0.42
USP4-212ENST00000486549 PRRT2Q7Z6L0 340 aaPredicted RBP17.65■□□□□ 0.42
USP4-212ENST00000486549 IFNL3Q8IZI9 196 aa17.65■□□□□ 0.42
USP4-212ENST00000486549 ZNF280CQ8ND82 737 aa17.65■□□□□ 0.42
USP4-212ENST00000486549 NACAP1Q9BZK3 213 aa17.65■□□□□ 0.42
USP4-212ENST00000486549 CABP5Q9NP86 173 aa17.65■□□□□ 0.42
USP4-212ENST00000486549 DIAPH3Q9NSV4 1193 aa17.65■□□□□ 0.42
USP4-212ENST00000486549 SWAP70Q9UH65 585 aa17.65■□□□□ 0.42
USP4-212ENST00000486549 LOC285556D6RIA3 1793 aa17.64■□□□□ 0.41
USP4-212ENST00000486549 CDK8P49336 464 aa17.64■□□□□ 0.41
USP4-212ENST00000486549 MOGSQ13724 837 aa17.64■□□□□ 0.41
USP4-212ENST00000486549 MCMDC2Q4G0Z9 681 aa17.64■□□□□ 0.41
USP4-212ENST00000486549 SKAP1Q86WV1 359 aa17.64■□□□□ 0.41
USP4-212ENST00000486549 TBC1D2Q9BYX2 928 aa17.64■□□□□ 0.41
USP4-212ENST00000486549 NAPBQ9H115 298 aa17.64■□□□□ 0.41
USP4-212ENST00000486549 ZCCHC17Q9NP64 241 aaKnown RBP17.64■□□□□ 0.41
USP4-212ENST00000486549 GINM1Q9NU53 330 aa17.64■□□□□ 0.41
USP4-212ENST00000486549 PDHXO00330 501 aa17.63■□□□□ 0.41
USP4-212ENST00000486549 HMGCS2P54868 508 aa17.63■□□□□ 0.41
USP4-212ENST00000486549 MTMR2Q13614 643 aa17.63■□□□□ 0.41
USP4-212ENST00000486549 SBK1Q52WX2 424 aa17.63■□□□□ 0.41
USP4-212ENST00000486549 VPS53Q5VIR6 699 aa17.63■□□□□ 0.41
USP4-212ENST00000486549 CWC27Q6UX04 472 aaKnown RBP17.63■□□□□ 0.41
USP4-212ENST00000486549 C16orf86Q6ZW13 317 aa17.63■□□□□ 0.41
USP4-212ENST00000486549 FASTKD5Q7L8L6 764 aaKnown RBP17.63■□□□□ 0.41
USP4-212ENST00000486549 ANKRD23Q86SG2 305 aa17.63■□□□□ 0.41
USP4-212ENST00000486549 ZNF589Q86UQ0 364 aaPredicted RBP17.63■□□□□ 0.41
USP4-212ENST00000486549 TICAM2Q86XR7 235 aa17.63■□□□□ 0.41
USP4-212ENST00000486549 ERO1AQ96HE7 468 aa17.63■□□□□ 0.41
USP4-212ENST00000486549 ZFYVE28Q9HCC9 887 aa17.63■□□□□ 0.41
USP4-212ENST00000486549 HIP1O00291 1037 aa17.62■□□□□ 0.41
USP4-212ENST00000486549 GPAT2Q6NUI2 795 aa17.62■□□□□ 0.41
USP4-212ENST00000486549 WDR18Q9BV38 432 aa17.62■□□□□ 0.41
USP4-212ENST00000486549 CCDC171Q6TFL3 1326 aa17.62■□□□□ 0.41
USP4-212ENST00000486549 FOXP2O15409 715 aa17.61■□□□□ 0.41
USP4-212ENST00000486549 AKR1B1P15121 316 aa17.61■□□□□ 0.41
USP4-212ENST00000486549 RGS19P49795 217 aa17.61■□□□□ 0.41
USP4-212ENST00000486549 SEPT2Q15019 361 aa17.61■□□□□ 0.41
USP4-212ENST00000486549 FBXO46Q6PJ61 603 aaPredicted RBP17.61■□□□□ 0.41
USP4-212ENST00000486549 FEZ1Q99689 392 aa17.61■□□□□ 0.41
USP4-212ENST00000486549 ROBO3Q96MS0 1386 aa17.61■□□□□ 0.41
USP4-212ENST00000486549 USP17L10C9JJH3 530 aa17.6■□□□□ 0.41
USP4-212ENST00000486549 GUCY1A2P33402 732 aa17.6■□□□□ 0.41
USP4-212ENST00000486549 BACE1P56817 501 aa17.6■□□□□ 0.41
USP4-212ENST00000486549 PPARAQ07869 468 aa17.6■□□□□ 0.41
USP4-212ENST00000486549 ZYXQ15942 572 aaKnown RBP17.6■□□□□ 0.41
USP4-212ENST00000486549 TREML2Q5T2D2 321 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms