RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ADGRA2Q96PE1 1338 aa20.44■□□□□ 0.86
VIM-205ENST00000485947 SDSP20132 328 aa20.43■□□□□ 0.86
VIM-205ENST00000485947 HOXD10P28358 340 aa20.43■□□□□ 0.86
VIM-205ENST00000485947 PABPC4Q13310 644 aaKnown RBP eCLIP20.43■□□□□ 0.86
VIM-205ENST00000485947 ZSCAN25Q6NSZ9 544 aa20.43■□□□□ 0.86
VIM-205ENST00000485947 PNMA3Q9UL41 463 aa20.43■□□□□ 0.86
VIM-205ENST00000485947 AGTPBP1Q9UPW5 1226 aa20.43■□□□□ 0.86
VIM-205ENST00000485947 TRIM75PA6NK02 468 aa20.42■□□□□ 0.86
VIM-205ENST00000485947 FAM196BA6NMK8 535 aa20.42■□□□□ 0.86
VIM-205ENST00000485947 SH3D19Q5HYK7 790 aa20.42■□□□□ 0.86
VIM-205ENST00000485947 ARMC5Q96C12 935 aa20.42■□□□□ 0.86
VIM-205ENST00000485947 BOLA2Q9H3K6 86 aa20.42■□□□□ 0.86
VIM-205ENST00000485947 SERPINB13Q9UIV8 391 aa20.42■□□□□ 0.86
VIM-205ENST00000485947 ZNF532Q9HCE3 1301 aa20.42■□□□□ 0.86
VIM-205ENST00000485947 FOCADQ5VW36 1801 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 TCRBV5S4A2TA0A5A2 114 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 C19orf81C9J6K1 198 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 EIF5BO60841 1220 aaKnown RBP20.41■□□□□ 0.86
VIM-205ENST00000485947 CDC45O75419 566 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 SLURP2P0DP57 97 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 SPP2Q13103 211 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 UBE3CQ15386 1083 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 HABP4Q5JVS0 413 aaKnown RBP20.41■□□□□ 0.86
VIM-205ENST00000485947 TATDN1Q6P1N9 297 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 GADL1Q6ZQY3 521 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 NBPF11Q86T75 865 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 DNAJC18Q9H819 358 aa20.41■□□□□ 0.86
VIM-205ENST00000485947 TRIM6-TRIM34B2RNG4 842 aa20.4■□□□□ 0.86
VIM-205ENST00000485947 BCRP11274 1271 aa20.4■□□□□ 0.86
VIM-205ENST00000485947 ADD2P35612 726 aa20.4■□□□□ 0.86
VIM-205ENST00000485947 MYO5AQ9Y4I1 1855 aaKnown RBP20.4■□□□□ 0.86
VIM-205ENST00000485947 BACE1P56817 501 aa20.39■□□□□ 0.85
VIM-205ENST00000485947 CASC1Q6TDU7 716 aa20.39■□□□□ 0.85
VIM-205ENST00000485947 EVI5LQ96CN4 794 aa20.39■□□□□ 0.85
VIM-205ENST00000485947 SAP30BPQ9UHR5 308 aaKnown RBP20.39■□□□□ 0.85
VIM-205ENST00000485947 CPA4Q9UI42 421 aa20.39■□□□□ 0.85
VIM-205ENST00000485947 GCLCP48506 637 aaPredicted RBP20.38■□□□□ 0.85
VIM-205ENST00000485947 RRP1BQ14684 758 aaKnown RBP20.38■□□□□ 0.85
VIM-205ENST00000485947 SMCR8Q8TEV9 937 aaPredicted RBP20.38■□□□□ 0.85
VIM-205ENST00000485947 RILPL2Q969X0 211 aa20.38■□□□□ 0.85
VIM-205ENST00000485947 ATP8A2Q9NTI2 1148 aa20.38■□□□□ 0.85
VIM-205ENST00000485947 ZBTB21Q9ULJ3 1066 aa20.38■□□□□ 0.85
VIM-205ENST00000485947 CDK5RAP2Q96SN8 1893 aa20.37■□□□□ 0.85
VIM-205ENST00000485947 PHIPQ8WWQ0 1821 aa20.37■□□□□ 0.85
VIM-205ENST00000485947 CYP2C8P10632 490 aa20.37■□□□□ 0.85
VIM-205ENST00000485947 FCGRTP55899 365 aa20.37■□□□□ 0.85
VIM-205ENST00000485947 LRRFIP1Q32MZ4 808 aaKnown RBP20.37■□□□□ 0.85
VIM-205ENST00000485947 TICAM2Q86XR7 235 aa20.37■□□□□ 0.85
VIM-205ENST00000485947 TMOD4Q9NZQ9 345 aa20.37■□□□□ 0.85
VIM-205ENST00000485947 USP17L10C9JJH3 530 aa20.36■□□□□ 0.85
VIM-205ENST00000485947 POLR3DP05423 398 aaPredicted RBP20.36■□□□□ 0.85
VIM-205ENST00000485947 OSBPP22059 807 aa20.36■□□□□ 0.85
VIM-205ENST00000485947 HOXA7P31268 230 aaPredicted RBP20.36■□□□□ 0.85
VIM-205ENST00000485947 PSMC4P43686 418 aa20.36■□□□□ 0.85
VIM-205ENST00000485947 CAP1Q01518 475 aa20.36■□□□□ 0.85
VIM-205ENST00000485947 DDRGK1Q96HY6 314 aa20.36■□□□□ 0.85
VIM-205ENST00000485947 DCP1AQ9NPI6 582 aaPredicted RBP20.36■□□□□ 0.85
VIM-205ENST00000485947 MCM9Q9NXL9 1143 aa20.36■□□□□ 0.85
VIM-205ENST00000485947 SRRDQ9UH36 339 aa20.36■□□□□ 0.85
VIM-205ENST00000485947 SIPA1L1O43166 1804 aa20.35■□□□□ 0.85
VIM-205ENST00000485947 HTTP42858 3142 aa20.35■□□□□ 0.85
VIM-205ENST00000485947 HMGCS2P54868 508 aa20.35■□□□□ 0.85
VIM-205ENST00000485947 GABPAQ06546 454 aa20.35■□□□□ 0.85
VIM-205ENST00000485947 CERKLQ49MI3 558 aaPredicted RBP20.35■□□□□ 0.85
VIM-205ENST00000485947 SLC9C1Q4G0N8 1177 aa20.35■□□□□ 0.85
VIM-205ENST00000485947 AMOTL1Q8IY63 956 aa20.35■□□□□ 0.85
VIM-205ENST00000485947 EDC3Q96F86 508 aaKnown RBP20.35■□□□□ 0.85
VIM-205ENST00000485947 CABP5Q9NP86 173 aa20.35■□□□□ 0.85
VIM-205ENST00000485947 SWAP70Q9UH65 585 aa20.35■□□□□ 0.85
VIM-205ENST00000485947 PTPRFP10586 1907 aa20.35■□□□□ 0.85
VIM-205ENST00000485947 HIP1O00291 1037 aa20.34■□□□□ 0.85
VIM-205ENST00000485947 FMNL1O95466 1100 aaPredicted RBP20.34■□□□□ 0.85
VIM-205ENST00000485947 ZFYP08048 801 aaPredicted RBP20.34■□□□□ 0.85
VIM-205ENST00000485947 FAM110CQ1W6H9 321 aa20.34■□□□□ 0.85
VIM-205ENST00000485947 CCDC84Q86UT8 332 aaPredicted RBP20.34■□□□□ 0.85
VIM-205ENST00000485947 LCORLQ8N3X6 602 aa20.34■□□□□ 0.85
VIM-205ENST00000485947 KBTBD3Q8NAB2 608 aa20.34■□□□□ 0.85
VIM-205ENST00000485947 GTF3C2Q8WUA4 911 aaPredicted RBP20.34■□□□□ 0.85
VIM-205ENST00000485947 TRIM47Q96LD4 638 aa20.34■□□□□ 0.85
VIM-205ENST00000485947 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.34■□□□□ 0.85
VIM-205ENST00000485947 PTCH2Q9Y6C5 1203 aa20.34■□□□□ 0.85
VIM-205ENST00000485947 KIAA0100Q14667 2235 aaKnown RBP20.33■□□□□ 0.85
VIM-205ENST00000485947 GH2P01242 217 aa20.33■□□□□ 0.85
VIM-205ENST00000485947 PLCD1P51178 756 aa20.33■□□□□ 0.85
VIM-205ENST00000485947 USP14P54578 494 aa20.33■□□□□ 0.85
VIM-205ENST00000485947 MTMR2Q13614 643 aa20.33■□□□□ 0.85
VIM-205ENST00000485947 ABCB5Q2M3G0 1257 aa20.33■□□□□ 0.85
VIM-205ENST00000485947 TREML2Q5T2D2 321 aa20.33■□□□□ 0.85
VIM-205ENST00000485947 ZNF333Q96JL9 665 aa20.33■□□□□ 0.85
VIM-205ENST00000485947 ARHGAP39Q9C0H5 1083 aa20.33■□□□□ 0.85
VIM-205ENST00000485947 MYH1P12882 1939 aa20.33■□□□□ 0.84
VIM-205ENST00000485947 MYH7P12883 1935 aa20.33■□□□□ 0.84
VIM-205ENST00000485947 MBD4O95243 580 aa20.32■□□□□ 0.84
VIM-205ENST00000485947 GDF11O95390 407 aa20.32■□□□□ 0.84
VIM-205ENST00000485947 USP17L2Q6R6M4 530 aa20.32■□□□□ 0.84
VIM-205ENST00000485947 C12orf42Q96LP6 360 aa20.32■□□□□ 0.84
VIM-205ENST00000485947 TMEM106CQ9BVX2 250 aa20.32■□□□□ 0.84
VIM-205ENST00000485947 ARMT1Q9H993 441 aa20.32■□□□□ 0.84
VIM-205ENST00000485947 CENPFP49454 3210 aa20.32■□□□□ 0.84
VIM-205ENST00000485947 ATAD5Q96QE3 1844 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms