RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 GJD2Q9UKL4 321 aa17.01■□□□□ 0.31
SQSTM1-208ENST00000485412 MAP4K4O95819 1239 aaPredicted RBP17■□□□□ 0.31
SQSTM1-208ENST00000485412 UQCRFS1P1P0C7P4 283 aa17■□□□□ 0.31
SQSTM1-208ENST00000485412 IRX3P78415 501 aaPredicted RBP17■□□□□ 0.31
SQSTM1-208ENST00000485412 TTC39AQ5SRH9 613 aa17■□□□□ 0.31
SQSTM1-208ENST00000485412 NAA16Q6N069 864 aaPredicted RBP17■□□□□ 0.31
SQSTM1-208ENST00000485412 SSH3Q8TE77 659 aa17■□□□□ 0.31
SQSTM1-208ENST00000485412 TGFBRAP1Q8WUH2 860 aa17■□□□□ 0.31
SQSTM1-208ENST00000485412 NDUFB9Q9Y6M9 179 aa17■□□□□ 0.31
SQSTM1-208ENST00000485412 FLT1P17948 1338 aa16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 CYP2B6P20813 491 aa16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 MAGEA10P43363 369 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 ZAP70P43403 619 aa16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 MNX1P50219 401 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 DYNLL1P63167 89 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 MTMR2Q13614 643 aa16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 TRIB2Q92519 343 aa16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 SAP30BPQ9UHR5 308 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 DBNLQ9UJU6 430 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 PALD1Q9ULE6 856 aa16.99■□□□□ 0.31
SQSTM1-208ENST00000485412 GDF11O95390 407 aa16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 ATP8B2P98198 1209 aa16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 SH3D19Q5HYK7 790 aa16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 ZKSCAN2Q63HK3 967 aa16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 Q7L0L9 218 aa16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 TDHQ8IZJ6 230 aa16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 NOL10Q9BSC4 688 aaKnown RBP16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 UBE2OQ9C0C9 1292 aaKnown RBP16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 GPR108Q9NPR9 543 aa16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 TMOD4Q9NZQ9 345 aa16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 MORF4L1Q9UBU8 362 aa16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 HERC5Q9UII4 1024 aaKnown RBP16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 OGDHLQ9ULD0 1010 aa16.98■□□□□ 0.31
SQSTM1-208ENST00000485412 SURF6O75683 361 aaKnown RBP16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 PRKAR2AP13861 404 aaKnown RBP16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 PPP4CP60510 307 aa16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 OS9Q13438 667 aaPredicted RBP16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 LRIT3Q3SXY7 679 aa16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 POTEEQ6S8J3 1075 aa16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 SOCS4Q8WXH5 440 aa16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 NUDT12Q9BQG2 462 aa16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 CCDC8Q9H0W5 538 aaPredicted RBP16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 TXNRD2Q9NNW7 524 aa16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 PI4KBQ9UBF8 816 aa16.97■□□□□ 0.31
SQSTM1-208ENST00000485412 PDE3AQ14432 1141 aa16.96■□□□□ 0.31
SQSTM1-208ENST00000485412 METTL16Q86W50 562 aaKnown RBP16.96■□□□□ 0.31
SQSTM1-208ENST00000485412 CCAR1Q8IX12 1150 aaKnown RBP16.96■□□□□ 0.31
SQSTM1-208ENST00000485412 GPRC5AQ8NFJ5 357 aa16.96■□□□□ 0.31
SQSTM1-208ENST00000485412 EAF2Q96CJ1 260 aaPredicted RBP16.96■□□□□ 0.31
SQSTM1-208ENST00000485412 STXBP5LQ9Y2K9 1186 aa16.96■□□□□ 0.31
SQSTM1-208ENST00000485412 CUL9Q8IWT3 2517 aa16.96■□□□□ 0.3
SQSTM1-208ENST00000485412 FRMPD3Q5JV73 1810 aa16.96■□□□□ 0.3
SQSTM1-208ENST00000485412 NAV1Q8NEY1 1877 aa16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 ZKSCAN1P17029 563 aaPredicted RBP16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 BACE1P56817 501 aa16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 CCDC158Q5M9N0 1113 aa16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 TRMT44Q8IYL2 757 aaKnown RBP16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 MIGA1Q8NAN2 632 aa16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 P2RX7Q99572 595 aaKnown RBP16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 WDR18Q9BV38 432 aa16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 TRIM34Q9BYJ4 488 aa16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 ANTXR1Q9H6X2 564 aa16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 ZBTB21Q9ULJ3 1066 aa16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 PFASO15067 1338 aa16.95■□□□□ 0.3
SQSTM1-208ENST00000485412 BAG3O95817 575 aa16.94■□□□□ 0.3
SQSTM1-208ENST00000485412 ASNSP08243 561 aa16.94■□□□□ 0.3
SQSTM1-208ENST00000485412 XRCC5P13010 732 aaKnown RBP16.94■□□□□ 0.3
SQSTM1-208ENST00000485412 HERVK_113P62684 666 aa16.94■□□□□ 0.3
SQSTM1-208ENST00000485412 MAP3K21Q5TCX8 1036 aa16.94■□□□□ 0.3
SQSTM1-208ENST00000485412 ITPRIPQ8IWB1 547 aa16.94■□□□□ 0.3
SQSTM1-208ENST00000485412 DHX36Q9H2U1 1008 aaKnown RBP16.94■□□□□ 0.3
SQSTM1-208ENST00000485412 CWC22Q9HCG8 908 aaKnown RBP16.94■□□□□ 0.3
SQSTM1-208ENST00000485412 MTMR10Q9NXD2 777 aa16.94■□□□□ 0.3
SQSTM1-208ENST00000485412 NOP58Q9Y2X3 529 aaKnown RBP16.94■□□□□ 0.3
SQSTM1-208ENST00000485412 A0A0C4DFX4 3053 aa16.93■□□□□ 0.3
SQSTM1-208ENST00000485412 C19orf81C9J6K1 198 aa16.93■□□□□ 0.3
SQSTM1-208ENST00000485412 CYP7A1P22680 504 aa16.93■□□□□ 0.3
SQSTM1-208ENST00000485412 MAPK4P31152 587 aa16.93■□□□□ 0.3
SQSTM1-208ENST00000485412 HOXA7P31268 230 aaPredicted RBP16.93■□□□□ 0.3
SQSTM1-208ENST00000485412 CRACR2BQ8N4Y2 399 aaPredicted RBP16.93■□□□□ 0.3
SQSTM1-208ENST00000485412 ZNF512BQ96KM6 892 aaPredicted RBP16.93■□□□□ 0.3
SQSTM1-208ENST00000485412 DNAH12Q6ZR08 3092 aa16.93■□□□□ 0.3
SQSTM1-208ENST00000485412 IDH1O75874 414 aaKnown RBP16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 PLCG2P16885 1265 aa16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 RGS2P41220 211 aa16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 HNRNPUQ00839 825 aaKnown RBP eCLIP16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 EVX2Q03828 476 aa16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 CACNB2Q08289 660 aaPredicted RBP16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 Q3C1V9 767 aa16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 PAGR1Q9BTK6 254 aa16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 PORCNQ9H237 461 aa16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 EMILIN3Q9NT22 766 aa16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 RBPJLQ9UBG7 517 aa16.92■□□□□ 0.3
SQSTM1-208ENST00000485412 USP17L10C9JJH3 530 aa16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 GH2P01242 217 aa16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 CCND3P30281 292 aaPredicted RBP16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 ERVK-9P63128 1117 aa16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 ERVK-24P63145 666 aa16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 MDM2Q00987 491 aaPredicted RBP16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 CEP85Q6P2H3 762 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms