RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 MIGA1Q8NAN2 632 aa23.5■■□□□ 1.35
COL27A1-205ENST00000485397 ANTXR1Q9H6X2 564 aa23.5■■□□□ 1.35
COL27A1-205ENST00000485397 TMOD4Q9NZQ9 345 aa23.49■■□□□ 1.35
COL27A1-205ENST00000485397 CDK5RAP2Q96SN8 1893 aa23.49■■□□□ 1.35
COL27A1-205ENST00000485397 PEX10O60683 326 aa23.48■■□□□ 1.35
COL27A1-205ENST00000485397 FARP2O94887 1054 aaPredicted RBP23.48■■□□□ 1.35
COL27A1-205ENST00000485397 HLA-DOAP06340 250 aa23.48■■□□□ 1.35
COL27A1-205ENST00000485397 FXR1P51114 621 aaKnown RBP eCLIP23.48■■□□□ 1.35
COL27A1-205ENST00000485397 DIEXFQ68CQ4 756 aaKnown RBP23.48■■□□□ 1.35
COL27A1-205ENST00000485397 AACSQ86V21 672 aa23.48■■□□□ 1.35
COL27A1-205ENST00000485397 MAGEB6Q8N7X4 407 aa23.48■■□□□ 1.35
COL27A1-205ENST00000485397 DEFB118Q96PH6 123 aa23.48■■□□□ 1.35
COL27A1-205ENST00000485397 P2RX7Q99572 595 aaKnown RBP23.48■■□□□ 1.35
COL27A1-205ENST00000485397 ZBTB21Q9ULJ3 1066 aa23.48■■□□□ 1.35
COL27A1-205ENST00000485397 IRX3P78415 501 aaPredicted RBP23.47■■□□□ 1.35
COL27A1-205ENST00000485397 HTATIP2Q9BUP3 242 aa23.47■■□□□ 1.35
COL27A1-205ENST00000485397 GINM1Q9NU53 330 aa23.47■■□□□ 1.35
COL27A1-205ENST00000485397 GJD2Q9UKL4 321 aa23.47■■□□□ 1.35
COL27A1-205ENST00000485397 C19orf81C9J6K1 198 aa23.46■■□□□ 1.35
COL27A1-205ENST00000485397 USP17L10C9JJH3 530 aa23.46■■□□□ 1.35
COL27A1-205ENST00000485397 CEP290O15078 2479 aa23.46■■□□□ 1.35
COL27A1-205ENST00000485397 TFRCP02786 760 aaKnown RBP23.46■■□□□ 1.35
COL27A1-205ENST00000485397 HOXA7P31268 230 aaPredicted RBP23.46■■□□□ 1.35
COL27A1-205ENST00000485397 FOCADQ5VW36 1801 aa23.46■■□□□ 1.35
COL27A1-205ENST00000485397 CHRDL2Q6WN34 429 aa23.46■■□□□ 1.35
COL27A1-205ENST00000485397 PAK6Q9NQU5 681 aaPredicted RBP23.46■■□□□ 1.35
COL27A1-205ENST00000485397 MORF4L1Q9UBU8 362 aa23.46■■□□□ 1.35
COL27A1-205ENST00000485397 ZBED9Q6R2W3 1325 aa23.45■■□□□ 1.34
COL27A1-205ENST00000485397 USP5P45974 858 aa23.45■■□□□ 1.34
COL27A1-205ENST00000485397 ERC1Q8IUD2 1116 aa23.45■■□□□ 1.34
COL27A1-205ENST00000485397 IL1RAPL2Q9NP60 686 aa23.45■■□□□ 1.34
COL27A1-205ENST00000485397 GH2P01242 217 aa23.44■■□□□ 1.34
COL27A1-205ENST00000485397 TXNRD2Q9NNW7 524 aa23.44■■□□□ 1.34
COL27A1-205ENST00000485397 EMILIN3Q9NT22 766 aa23.44■■□□□ 1.34
COL27A1-205ENST00000485397 HERVK_113P62684 666 aa23.43■■□□□ 1.34
COL27A1-205ENST00000485397 MAP3K12Q12852 859 aa23.43■■□□□ 1.34
COL27A1-205ENST00000485397 TRIM32Q13049 653 aa23.43■■□□□ 1.34
COL27A1-205ENST00000485397 RHPN1Q8TCX5 695 aa23.43■■□□□ 1.34
COL27A1-205ENST00000485397 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.43■■□□□ 1.341e-10■■■■■ 32.4
COL27A1-205ENST00000485397 HMGCRP04035 888 aa23.42■■□□□ 1.34
COL27A1-205ENST00000485397 CERS3Q8IU89 383 aa23.42■■□□□ 1.34
COL27A1-205ENST00000485397 CRISPLD2Q9H0B8 497 aa23.42■■□□□ 1.34
COL27A1-205ENST00000485397 RBPJLQ9UBG7 517 aa23.42■■□□□ 1.34
COL27A1-205ENST00000485397 CYP2B6P20813 491 aa23.41■■□□□ 1.34
COL27A1-205ENST00000485397 Q3C1V9 767 aa23.41■■□□□ 1.34
COL27A1-205ENST00000485397 TATDN1Q6P1N9 297 aa23.41■■□□□ 1.34
COL27A1-205ENST00000485397 USP17L2Q6R6M4 530 aa23.41■■□□□ 1.34
COL27A1-205ENST00000485397 GPRC5AQ8NFJ5 357 aa23.41■■□□□ 1.34
COL27A1-205ENST00000485397 MYH1P12882 1939 aa23.4■■□□□ 1.34
COL27A1-205ENST00000485397 APBB1O00213 710 aa23.4■■□□□ 1.34
COL27A1-205ENST00000485397 HSP90AB4PQ58FF6 505 aa23.4■■□□□ 1.34
COL27A1-205ENST00000485397 POTEEQ6S8J3 1075 aa23.4■■□□□ 1.34
COL27A1-205ENST00000485397 RIOK1Q9BRS2 568 aaKnown RBP23.4■■□□□ 1.34
COL27A1-205ENST00000485397 EHD4Q9H223 541 aa23.4■■□□□ 1.34
COL27A1-205ENST00000485397 RBM27Q9P2N5 1060 aaKnown RBP23.4■■□□□ 1.34
COL27A1-205ENST00000485397 SERPINB13Q9UIV8 391 aa23.4■■□□□ 1.34
COL27A1-205ENST00000485397 NR2E3Q9Y5X4 410 aa23.4■■□□□ 1.34
COL27A1-205ENST00000485397 TRIOBPQ9H2D6 2365 aa23.4■■□□□ 1.34
COL27A1-205ENST00000485397 CAPN2P17655 700 aa23.39■■□□□ 1.33
COL27A1-205ENST00000485397 ZYXQ15942 572 aaKnown RBP23.39■■□□□ 1.33
COL27A1-205ENST00000485397 TTC6Q86TZ1 520 aa23.39■■□□□ 1.33
COL27A1-205ENST00000485397 DIS3LQ8TF46 1054 aaKnown RBP23.39■■□□□ 1.33
COL27A1-205ENST00000485397 TRIB2Q92519 343 aa23.39■■□□□ 1.33
COL27A1-205ENST00000485397 PAWRQ96IZ0 340 aaKnown RBP23.39■■□□□ 1.33
COL27A1-205ENST00000485397 PAGR1Q9BTK6 254 aa23.39■■□□□ 1.33
COL27A1-205ENST00000485397 RPTORQ8N122 1335 aa23.38■■□□□ 1.33
COL27A1-205ENST00000485397 PLCD1P51178 756 aa23.38■■□□□ 1.33
COL27A1-205ENST00000485397 RAB3GAP1Q15042 981 aa23.38■■□□□ 1.33
COL27A1-205ENST00000485397 CERKLQ49MI3 558 aaPredicted RBP23.38■■□□□ 1.33
COL27A1-205ENST00000485397 BCL11AQ9H165 835 aa23.38■■□□□ 1.33
COL27A1-205ENST00000485397 PORCNQ9H237 461 aa23.38■■□□□ 1.33
COL27A1-205ENST00000485397 HMX1Q9NP08 348 aaPredicted RBP23.38■■□□□ 1.33
COL27A1-205ENST00000485397 PLXNB2O15031 1838 aa23.38■■□□□ 1.33
COL27A1-205ENST00000485397 MAGEB6P1A0A0J9YX57 407 aa23.37■■□□□ 1.33
COL27A1-205ENST00000485397 ERVK-9P63128 1117 aa23.37■■□□□ 1.33
COL27A1-205ENST00000485397 ERVK-24P63145 666 aa23.37■■□□□ 1.33
COL27A1-205ENST00000485397 TMED8Q6PL24 325 aaPredicted RBP23.37■■□□□ 1.33
COL27A1-205ENST00000485397 SIRT2Q8IXJ6 389 aa23.37■■□□□ 1.33
COL27A1-205ENST00000485397 ACER1Q8TDN7 264 aa23.37■■□□□ 1.33
COL27A1-205ENST00000485397 C12orf42Q96LP6 360 aa23.37■■□□□ 1.33
COL27A1-205ENST00000485397 FEZ1Q99689 392 aa23.37■■□□□ 1.33
COL27A1-205ENST00000485397 NUDT12Q9BQG2 462 aa23.37■■□□□ 1.33
COL27A1-205ENST00000485397 COG6Q9Y2V7 657 aa23.37■■□□□ 1.33
COL27A1-205ENST00000485397 EVI5O60447 810 aa23.36■■□□□ 1.33
COL27A1-205ENST00000485397 MS4A1P11836 297 aa23.36■■□□□ 1.33
COL27A1-205ENST00000485397 PDE6AP16499 860 aa23.36■■□□□ 1.33
COL27A1-205ENST00000485397 MAPK4P31152 587 aa23.36■■□□□ 1.33
COL27A1-205ENST00000485397 SHMT1P34896 483 aa23.36■■□□□ 1.33
COL27A1-205ENST00000485397 TTF1Q15361 905 aaPredicted RBP23.36■■□□□ 1.33
COL27A1-205ENST00000485397 ABCB5Q2M3G0 1257 aa23.36■■□□□ 1.33
COL27A1-205ENST00000485397 SLC9C2Q5TAH2 1124 aa23.36■■□□□ 1.33
COL27A1-205ENST00000485397 RPAP2Q8IXW5 612 aaPredicted RBP23.36■■□□□ 1.33
COL27A1-205ENST00000485397 CLASRPQ8N2M8 674 aaKnown RBP23.36■■□□□ 1.33
COL27A1-205ENST00000485397 KIF1BPQ96EK5 621 aa23.36■■□□□ 1.33
COL27A1-205ENST00000485397 GOLIM4O00461 696 aa23.35■■□□□ 1.33
COL27A1-205ENST00000485397 POLR3DP05423 398 aaPredicted RBP23.35■■□□□ 1.33
COL27A1-205ENST00000485397 EVX2Q03828 476 aa23.35■■□□□ 1.33
COL27A1-205ENST00000485397 NECAB2Q7Z6G3 386 aa23.35■■□□□ 1.33
COL27A1-205ENST00000485397 GTF3C2Q8WUA4 911 aaPredicted RBP23.35■■□□□ 1.33
COL27A1-205ENST00000485397 SOCS4Q8WXH5 440 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms