RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 TNNI3KQ59H18 835 aa15.97■□□□□ 0.15
HDAC6-227ENST00000485102 TRMT44Q8IYL2 757 aaKnown RBP15.97■□□□□ 0.15
HDAC6-227ENST00000485102 GPRC5AQ8NFJ5 357 aa15.97■□□□□ 0.15
HDAC6-227ENST00000485102 DIS3LQ8TF46 1054 aaKnown RBP15.97■□□□□ 0.15
HDAC6-227ENST00000485102 GTF3C2Q8WUA4 911 aaPredicted RBP15.97■□□□□ 0.15
HDAC6-227ENST00000485102 TGFBRAP1Q8WUH2 860 aa15.97■□□□□ 0.15
HDAC6-227ENST00000485102 SOCS4Q8WXH5 440 aa15.97■□□□□ 0.15
HDAC6-227ENST00000485102 NUDT12Q9BQG2 462 aa15.97■□□□□ 0.15
HDAC6-227ENST00000485102 STAP2Q9UGK3 403 aa15.97■□□□□ 0.15
HDAC6-227ENST00000485102 FPGT-TNNI3KV9GXZ4 949 aa15.97■□□□□ 0.15
HDAC6-227ENST00000485102 FLT1P17948 1338 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 FOCADQ5VW36 1801 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 MAPK4P31152 587 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 JAG1P78504 1218 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 ATP8B2P98198 1209 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 TMED8Q6PL24 325 aaPredicted RBP15.96■□□□□ 0.15
HDAC6-227ENST00000485102 CERS3Q8IU89 383 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 TRIB2Q92519 343 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 USP6NLQ92738 828 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 TXNRD2Q9NNW7 524 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 RBPJLQ9UBG7 517 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 NOP58Q9Y2X3 529 aaKnown RBP15.96■□□□□ 0.15
HDAC6-227ENST00000485102 CDK5RAP2Q96SN8 1893 aa15.96■□□□□ 0.15
HDAC6-227ENST00000485102 COL6A3P12111 3177 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 BCAR3O75815 825 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 TRIM32Q13049 653 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 TTC39AQ5SRH9 613 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 ADGRA1Q86SQ6 560 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 MAPKAPK5Q8IW41 473 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 DBNDD2Q9BQY9 259 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 SNRKQ9NRH2 765 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 PALD1Q9ULE6 856 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 ZBTB21Q9ULJ3 1066 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 MAST2Q6P0Q8 1798 aa15.95■□□□□ 0.14
HDAC6-227ENST00000485102 SOX1O00570 391 aaPredicted RBP15.94■□□□□ 0.14
HDAC6-227ENST00000485102 ERVK-9P63128 1117 aa15.94■□□□□ 0.14
HDAC6-227ENST00000485102 ERVK-24P63145 666 aa15.94■□□□□ 0.14
HDAC6-227ENST00000485102 C12orf42Q96LP6 360 aa15.94■□□□□ 0.14
HDAC6-227ENST00000485102 TNNQ9UQP3 1299 aa15.94■□□□□ 0.14
HDAC6-227ENST00000485102 HLA-DOAP06340 250 aa15.93■□□□□ 0.14
HDAC6-227ENST00000485102 CYP2B6P20813 491 aa15.93■□□□□ 0.14
HDAC6-227ENST00000485102 Q3C1V9 767 aa15.93■□□□□ 0.14
HDAC6-227ENST00000485102 LRIT3Q3SXY7 679 aa15.93■□□□□ 0.14
HDAC6-227ENST00000485102 MORN1Q5T089 497 aa15.93■□□□□ 0.14
HDAC6-227ENST00000485102 TATDN1Q6P1N9 297 aa15.93■□□□□ 0.14
HDAC6-227ENST00000485102 POTEEQ6S8J3 1075 aa15.93■□□□□ 0.14
HDAC6-227ENST00000485102 CRACR2BQ8N4Y2 399 aaPredicted RBP15.93■□□□□ 0.14
HDAC6-227ENST00000485102 TMEM57Q8N5G2 664 aa15.93■□□□□ 0.14
HDAC6-227ENST00000485102 FRAT1Q92837 279 aaPredicted RBP15.93■□□□□ 0.14
HDAC6-227ENST00000485102 C11orf49Q9H6J7 331 aa15.93■□□□□ 0.14
HDAC6-227ENST00000485102 EMILIN3Q9NT22 766 aa15.93■□□□□ 0.14
HDAC6-227ENST00000485102 MYO5AQ9Y4I1 1855 aaKnown RBP15.93■□□□□ 0.14
HDAC6-227ENST00000485102 COL6A1P12109 1028 aa15.92■□□□□ 0.14
HDAC6-227ENST00000485102 PRKAR2AP13861 404 aaKnown RBP15.92■□□□□ 0.14
HDAC6-227ENST00000485102 ZAP70P43403 619 aa15.92■□□□□ 0.14
HDAC6-227ENST00000485102 PDE3AQ14432 1141 aa15.92■□□□□ 0.14
HDAC6-227ENST00000485102 ZKSCAN2Q63HK3 967 aa15.92■□□□□ 0.14
HDAC6-227ENST00000485102 USP17L2Q6R6M4 530 aa15.92■□□□□ 0.14
HDAC6-227ENST00000485102 CLUAP1Q96AJ1 413 aa15.92■□□□□ 0.14
HDAC6-227ENST00000485102 TRIM34Q9BYJ4 488 aa15.92■□□□□ 0.14
HDAC6-227ENST00000485102 EHD4Q9H223 541 aa15.92■□□□□ 0.14
HDAC6-227ENST00000485102 DBNLQ9UJU6 430 aaKnown RBP15.92■□□□□ 0.14
HDAC6-227ENST00000485102 A0A0C4DFX4 3053 aa15.92■□□□□ 0.14
HDAC6-227ENST00000485102 SURF6O75683 361 aaKnown RBP15.91■□□□□ 0.14
HDAC6-227ENST00000485102 RGS2P41220 211 aa15.91■□□□□ 0.14
HDAC6-227ENST00000485102 CACNB2Q08289 660 aaPredicted RBP15.91■□□□□ 0.14
HDAC6-227ENST00000485102 LHX8Q68G74 356 aa15.91■□□□□ 0.14
HDAC6-227ENST00000485102 LBX2Q6XYB7 198 aa15.91■□□□□ 0.14
HDAC6-227ENST00000485102 GPR142Q7Z601 462 aa15.91■□□□□ 0.14
HDAC6-227ENST00000485102 PLEKHH3Q7Z736 793 aa15.91■□□□□ 0.14
HDAC6-227ENST00000485102 LRCH3Q96II8 777 aa15.91■□□□□ 0.14
HDAC6-227ENST00000485102 PORCNQ9H237 461 aa15.91■□□□□ 0.14
HDAC6-227ENST00000485102 PIH1D3Q9NQM4 214 aaKnown RBP15.91■□□□□ 0.14
HDAC6-227ENST00000485102 RABGAP1Q9Y3P9 1069 aa15.91■□□□□ 0.14
HDAC6-227ENST00000485102 DDX60LQ5H9U9 1706 aaKnown RBP15.91■□□□□ 0.14
HDAC6-227ENST00000485102 CUL9Q8IWT3 2517 aa15.9■□□□□ 0.14
HDAC6-227ENST00000485102 GDF11O95390 407 aa15.9■□□□□ 0.14
HDAC6-227ENST00000485102 ZKSCAN1P17029 563 aaPredicted RBP15.9■□□□□ 0.14
HDAC6-227ENST00000485102 CYP7A1P22680 504 aa15.9■□□□□ 0.14
HDAC6-227ENST00000485102 OS9Q13438 667 aaPredicted RBP15.9■□□□□ 0.14
HDAC6-227ENST00000485102 SHROOM1Q2M3G4 852 aaPredicted RBP15.9■□□□□ 0.14
HDAC6-227ENST00000485102 C7orf61Q8IZ16 206 aa15.9■□□□□ 0.14
HDAC6-227ENST00000485102 PFASO15067 1338 aa15.9■□□□□ 0.14
HDAC6-227ENST00000485102 MYH1P12882 1939 aa15.9■□□□□ 0.14
HDAC6-227ENST00000485102 USP17L15C9J2P7 530 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 USP17L13C9JLJ4 530 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 USP17L11C9JVI0 530 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 USP17L18D6R9N7 530 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 USP17L22D6RA61 530 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 USP17L17D6RBQ6 530 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 USP17L19D6RCP7 530 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 USP17L20D6RJB6 530 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 PEX10O60683 326 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 GH2P01242 217 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 USP14P54578 494 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 DYNLL1P63167 89 aaKnown RBP15.89■□□□□ 0.13
HDAC6-227ENST00000485102 CCNA1P78396 465 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 USP17L24Q0WX57 530 aa15.89■□□□□ 0.13
HDAC6-227ENST00000485102 EAF2Q96CJ1 260 aaPredicted RBP15.89■□□□□ 0.13
HDAC6-227ENST00000485102 APBA2Q99767 749 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms