RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 CALM2P0DP24 149 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 CALM3P0DP25 149 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 CYP2D6P10635 497 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 RASA1P20936 1047 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 EPS15P42566 896 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 ANTXR2P58335 489 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 TCP10Q12799 353 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 CUL4AQ13619 759 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 TOB2Q14106 344 aaPredicted RBP11.94□□□□□ -0.5
USP39-215ENST00000481409 WTAPQ15007 396 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 TMEM67Q5HYA8 995 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 RRP12Q5JTH9 1297 aaKnown RBP11.94□□□□□ -0.5
USP39-215ENST00000481409 RBM26Q5T8P6 1007 aaKnown RBP11.94□□□□□ -0.5
USP39-215ENST00000481409 TATDN1Q6P1N9 297 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 SYNE3Q6ZMZ3 975 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 IGDCC4Q8TDY8 1250 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 CSRNP1Q96S65 589 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 ZSCAN10Q96SZ4 725 aaPredicted RBP11.94□□□□□ -0.5
USP39-215ENST00000481409 PGAP2Q9UHJ9 254 aa11.94□□□□□ -0.5
USP39-215ENST00000481409 DHX16O60231 1041 aaKnown RBP11.93□□□□□ -0.5
USP39-215ENST00000481409 EPHX2P34913 555 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 NOVP48745 357 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 CACNB3P54284 484 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 TFAP4Q01664 338 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 RASA3Q14644 834 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 SUPT20HL1Q3ZLR7 823 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 DCAF15Q66K64 600 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 CYB5R4Q7L1T6 521 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 SH3BP5LQ7L8J4 393 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 BRF1Q92994 677 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 DCPSQ96C86 337 aaKnown RBP11.93□□□□□ -0.5
USP39-215ENST00000481409 TMX3Q96JJ7 454 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 MAP3K14Q99558 947 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 DEFB129Q9H1M3 183 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 CWC22Q9HCG8 908 aaKnown RBP11.93□□□□□ -0.5
USP39-215ENST00000481409 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.93□□□□□ -0.5
USP39-215ENST00000481409 TACC3Q9Y6A5 838 aa11.93□□□□□ -0.5
USP39-215ENST00000481409 NID2Q14112 1375 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 TNKSO95271 1327 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 CCDC196A0A1B0GTZ2 297 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 SHTN1A0MZ66 631 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 CCDC69A6NI79 296 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 EGFRP00533 1210 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 HSP90AA1P07900 732 aaKnown RBP11.92□□□□□ -0.5
USP39-215ENST00000481409 CPA1P15085 419 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 SHMT1P34896 483 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 SEC23AQ15436 765 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 CERKLQ49MI3 558 aaPredicted RBP11.92□□□□□ -0.5
USP39-215ENST00000481409 IFIT1BQ5T764 474 aaKnown RBP11.92□□□□□ -0.5
USP39-215ENST00000481409 ANGEL2Q5VTE6 544 aaKnown RBP11.92□□□□□ -0.5
USP39-215ENST00000481409 ZFPM1Q8IX07 1006 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 TRPM4Q8TD43 1214 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 DYNLL2Q96FJ2 89 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 LLPHQ9BRT6 129 aaKnown RBP11.92□□□□□ -0.5
USP39-215ENST00000481409 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.92□□□□□ -0.5
USP39-215ENST00000481409 LY9Q9HBG7 655 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 CABP5Q9NP86 173 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 SIPA1L1O43166 1804 aa11.92□□□□□ -0.5
USP39-215ENST00000481409 PFKFB2O60825 505 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 PRDM1O75626 825 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 DDAH1O94760 285 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 CD2BP2O95400 341 aaKnown RBP11.91□□□□□ -0.5
USP39-215ENST00000481409 VEGFAP15692 232 aaPredicted RBP11.91□□□□□ -0.5
USP39-215ENST00000481409 HIRAP54198 1017 aaPredicted RBP11.91□□□□□ -0.5
USP39-215ENST00000481409 NFXL1Q6ZNB6 911 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 TMEM179Q6ZVK1 233 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 SULF1Q8IWU6 871 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 RGS22Q8NE09 1264 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 TEPSINQ96N21 525 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 SLKQ9H2G2 1235 aaPredicted RBP11.91□□□□□ -0.5
USP39-215ENST00000481409 TAF1DQ9H5J8 278 aaPredicted RBP11.91□□□□□ -0.5
USP39-215ENST00000481409 GGA3Q9NZ52 723 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 TPCN1Q9ULQ1 816 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 SLC12A7Q9Y666 1083 aa11.91□□□□□ -0.5
USP39-215ENST00000481409 GOLGB1Q14789 3259 aaKnown RBP11.91□□□□□ -0.5
USP39-215ENST00000481409 GREB1LQ9C091 1923 aaPredicted RBP11.91□□□□□ -0.5
USP39-215ENST00000481409 IGKV6D-41A0A0C4DH26 115 aa11.9□□□□□ -0.5
USP39-215ENST00000481409 CDKL5O76039 1030 aa11.9□□□□□ -0.5
USP39-215ENST00000481409 PDIA3P30101 505 aaKnown RBP11.9□□□□□ -0.5
USP39-215ENST00000481409 CPLX2Q6PUV4 134 aaKnown RBP11.9□□□□□ -0.5
USP39-215ENST00000481409 APOA5Q6Q788 366 aa11.9□□□□□ -0.5
USP39-215ENST00000481409 CATIPQ7Z7H3 387 aa11.9□□□□□ -0.5
USP39-215ENST00000481409 ENAHQ8N8S7 591 aaPredicted RBP11.9□□□□□ -0.5
USP39-215ENST00000481409 TMEM39BQ9GZU3 492 aa11.9□□□□□ -0.5
USP39-215ENST00000481409 KANSL2Q9H9L4 492 aa11.9□□□□□ -0.5
USP39-215ENST00000481409 INCENPQ9NQS7 918 aa11.9□□□□□ -0.5
USP39-215ENST00000481409 KIF3AQ9Y496 699 aa11.9□□□□□ -0.5
USP39-215ENST00000481409 KLF18A0A0U1RQI7 1052 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 UNCXA6NJT0 531 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 ZBTB43O43298 467 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 TTLL1O95922 423 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 NF2P35240 595 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 ME3Q16798 604 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 ABCB5Q2M3G0 1257 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 FAM47AQ5JRC9 791 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 CDC37L1Q7L3B6 337 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 CHST3Q7LGC8 479 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 STK11IPQ8N1F8 1099 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 SLC44A5Q8NCS7 719 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 GTF3C6Q969F1 213 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms