RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 MCMDC2Q4G0Z9 681 aa8.25□□□□□ -1.09
BRCA1-215ENST00000478531 VPS53Q5VIR6 699 aa8.25□□□□□ -1.09
BRCA1-215ENST00000478531 CTR9Q6PD62 1173 aa8.25□□□□□ -1.09
BRCA1-215ENST00000478531 FOXP4Q8IVH2 680 aaPredicted RBP8.25□□□□□ -1.09
BRCA1-215ENST00000478531 NACAP1Q9BZK3 213 aa8.25□□□□□ -1.09
BRCA1-215ENST00000478531 HELLSQ9NRZ9 838 aa8.25□□□□□ -1.09
BRCA1-215ENST00000478531 WBP1LQ9NX94 342 aa8.25□□□□□ -1.09
BRCA1-215ENST00000478531 ARPP21Q9UBL0 812 aaPredicted RBP8.25□□□□□ -1.09
BRCA1-215ENST00000478531 ZHX2Q9Y6X8 837 aa8.25□□□□□ -1.09
BRCA1-215ENST00000478531 CASP8AP2Q9UKL3 1982 aa8.25□□□□□ -1.09
BRCA1-215ENST00000478531 CCL15-CCL14A0A0B4J2E2 113 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 MANSC4A6NHS7 340 aaPredicted RBP8.24□□□□□ -1.09
BRCA1-215ENST00000478531 TRIM75PA6NK02 468 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 HIP1O00291 1037 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 MPHOSPH10O00566 681 aaKnown RBP8.24□□□□□ -1.09
BRCA1-215ENST00000478531 FOXN1O15353 648 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 TRPA1O75762 1119 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 CAP2P40123 477 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 GTF2A2P52657 109 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 PPATQ06203 517 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 CCL15Q16663 113 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 METTL16Q86W50 562 aaKnown RBP8.24□□□□□ -1.09
BRCA1-215ENST00000478531 NAPBQ9H115 298 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 CCDC171Q6TFL3 1326 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 LOC285556D6RIA3 1793 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 HTTP42858 3142 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 PATL2C9JE40 543 aaKnown RBP8.24□□□□□ -1.09
BRCA1-215ENST00000478531 GH2P01242 217 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 SHMT1P34896 483 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 SNAPC2Q13487 334 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 RAB3GAP1Q15042 981 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 CERKLQ49MI3 558 aaPredicted RBP8.24□□□□□ -1.09
BRCA1-215ENST00000478531 C12orf60Q5U649 245 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 ERICH6BQ5W0A0 696 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 GIMAP6Q6P9H5 292 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 IFNL3Q8IZI9 196 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 ZBTB21Q9ULJ3 1066 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 MYH4Q9Y623 1939 aa8.24□□□□□ -1.09
BRCA1-215ENST00000478531 IGF2BP3O00425 579 aaKnown RBP eCLIP8.23□□□□□ -1.09
BRCA1-215ENST00000478531 FOXP2O15409 715 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 ASNSP08243 561 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 CETPP11597 493 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 MFAP1P55081 439 aaKnown RBP8.23□□□□□ -1.09
BRCA1-215ENST00000478531 JAG1P78504 1218 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 GABPAQ06546 454 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 ABCB5Q2M3G0 1257 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 TATDN1Q6P1N9 297 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 REM2Q8IYK8 340 aaPredicted RBP8.23□□□□□ -1.09
BRCA1-215ENST00000478531 BRI3BPQ8WY22 251 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 MS4A4AQ96JQ5 239 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 RNF186Q9NXI6 227 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 ROBO3Q96MS0 1386 aa8.23□□□□□ -1.09
BRCA1-215ENST00000478531 USP17L5A8MUK1 530 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 TM4SF4P48230 202 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 CDK8P49336 464 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 GADL1Q6ZQY3 521 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 C16orf86Q6ZW13 317 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 TICAM2Q86XR7 235 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 IFNL1Q8IU54 200 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 PTPN18Q99952 460 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 IL25Q9H293 177 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 CABP5Q9NP86 173 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 SWAP70Q9UH65 585 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 AFG3L2Q9Y4W6 797 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 GREB1LQ9C091 1923 aaPredicted RBP8.22□□□□□ -1.09
BRCA1-215ENST00000478531 CA12O43570 354 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 PRDM1O75626 825 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 TBC1D8O95759 1140 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 HSPD1P10809 573 aaKnown RBP8.22□□□□□ -1.09
BRCA1-215ENST00000478531 CHMLP26374 656 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 CTCFP49711 727 aaPredicted RBP8.22□□□□□ -1.09
BRCA1-215ENST00000478531 LBX1P52954 281 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 HMGCS2P54868 508 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 PPARAQ07869 468 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 SPP2Q13103 211 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 DGKZQ13574 1117 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 MTMR2Q13614 643 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 ZYXQ15942 572 aaKnown RBP8.22□□□□□ -1.09
BRCA1-215ENST00000478531 SBK1Q52WX2 424 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 OTUD7BQ6GQQ9 843 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 FAM43AQ8N2R8 423 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 ZNF280CQ8ND82 737 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 MKNK2Q9HBH9 465 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 AS3MTQ9HBK9 375 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 KCNH4Q9UQ05 1017 aa8.22□□□□□ -1.09
BRCA1-215ENST00000478531 A0A0G2JLL6 359 aaPredicted RBP8.21□□□□□ -1.09
BRCA1-215ENST00000478531 BTBD19C9JJ37 291 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 HSPA8P11142 646 aaKnown RBP8.21□□□□□ -1.09
BRCA1-215ENST00000478531 AKR1B1P15121 316 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 INHBEP58166 350 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 HAND2P61296 217 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 CTDSPL2Q05D32 466 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 SEPT2Q15019 361 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 BMP2KLQ5H9B9 411 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 PRRT2Q7Z6L0 340 aaPredicted RBP8.21□□□□□ -1.09
BRCA1-215ENST00000478531 CLEC10AQ8IUN9 316 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 RUFY2Q8WXA3 655 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 FEZ1Q99689 392 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 SAGE1Q9NXZ1 904 aa8.21□□□□□ -1.09
BRCA1-215ENST00000478531 RAD50Q92878 1312 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms