RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 RPAP1Q9BWH6 1393 aaPredicted RBP16.53■□□□□ 0.24
HDAC6-220ENST00000477528 CTAGE9A4FU28 777 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 RIMBP2O15034 1052 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 FAM193AP78312 1265 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 KRT83P78385 493 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 TIGD1Q96MW7 591 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 PLIN2Q99541 437 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 PALLDQ8WX93 1383 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 ANKRD26Q9UPS8 1709 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 ARHGAP6O43182 974 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 KARSQ15046 597 aaKnown RBP16.53■□□□□ 0.24
HDAC6-220ENST00000477528 CEP112Q8N8E3 955 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 CTAGE15A4D2H0 777 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 DDAH1O94760 285 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 CTAGE8P0CG41 777 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 LIFRP42702 1097 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 ZFYVE27Q5T4F4 411 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 CTAGE6Q86UF2 777 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 CTAGE4Q8IX94 777 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 PDLIM2Q96JY6 352 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 EYA3Q99504 573 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 LUC7L2Q9Y383 392 aaKnown RBP16.53■□□□□ 0.24
HDAC6-220ENST00000477528 ABCC12Q96J65 1359 aa16.52■□□□□ 0.24
HDAC6-220ENST00000477528 ENOX2Q16206 610 aaKnown RBP16.52■□□□□ 0.24
HDAC6-220ENST00000477528 FOXP1Q9H334 677 aaPredicted RBP16.52■□□□□ 0.24
HDAC6-220ENST00000477528 LZTFL1Q9NQ48 299 aa16.52■□□□□ 0.24
HDAC6-220ENST00000477528 RASGRF1Q13972 1273 aa16.52■□□□□ 0.24
HDAC6-220ENST00000477528 LRRC8AQ8IWT6 810 aa16.52■□□□□ 0.24
HDAC6-220ENST00000477528 CLIC6Q96NY7 704 aa16.52■□□□□ 0.24
HDAC6-220ENST00000477528 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.52■□□□□ 0.24
HDAC6-220ENST00000477528 SUSD4Q5VX71 490 aa16.52■□□□□ 0.23
HDAC6-220ENST00000477528 TRIML1Q8N9V2 468 aa16.52■□□□□ 0.23
HDAC6-220ENST00000477528 ARFGAP3Q9NP61 516 aa16.52■□□□□ 0.23
HDAC6-220ENST00000477528 SLIT1O75093 1534 aa16.52■□□□□ 0.23
HDAC6-220ENST00000477528 CCT6AP40227 531 aaKnown RBP16.52■□□□□ 0.23
HDAC6-220ENST00000477528 TRIM14Q14142 442 aa16.52■□□□□ 0.23
HDAC6-220ENST00000477528 USPL1Q5W0Q7 1092 aa16.52■□□□□ 0.23
HDAC6-220ENST00000477528 STRBPQ96SI9 672 aaKnown RBP16.52■□□□□ 0.23
HDAC6-220ENST00000477528 GPHNQ9NQX3 736 aaPredicted RBP16.52■□□□□ 0.23
HDAC6-220ENST00000477528 PPP1R1BQ9UD71 204 aaPredicted RBP16.52■□□□□ 0.23
HDAC6-220ENST00000477528 IFNAR1P17181 557 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 PAK1Q13153 545 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 TCERG1LQ5VWI1 586 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 C11orf57Q6ZUT1 292 aaPredicted RBP16.51■□□□□ 0.23
HDAC6-220ENST00000477528 KRT25Q7Z3Z0 450 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 LCORLQ8N3X6 602 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 GOLGA1Q92805 767 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 RNF26Q9BY78 433 aaPredicted RBP16.51■□□□□ 0.23
HDAC6-220ENST00000477528 JADE2Q9NQC1 790 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 TBCAO75347 108 aaKnown RBP16.51■□□□□ 0.23
HDAC6-220ENST00000477528 CKAP4Q07065 602 aaKnown RBP16.51■□□□□ 0.23
HDAC6-220ENST00000477528 STXBP4Q6ZWJ1 553 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.51■□□□□ 0.23
HDAC6-220ENST00000477528 PYCARDQ9ULZ3 195 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 WDR19Q8NEZ3 1342 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 TUBB4BP68371 445 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 MAPKAPK5Q8IW41 473 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 TGFBRAP1Q8WUH2 860 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 POLR3GO15318 223 aaPredicted RBP16.51■□□□□ 0.23
HDAC6-220ENST00000477528 ARID4AP29374 1257 aaPredicted RBP16.51■□□□□ 0.23
HDAC6-220ENST00000477528 FEZ1Q99689 392 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 ATP8A2Q9NTI2 1148 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 ZSWIM5Q9P217 1185 aa16.51■□□□□ 0.23
HDAC6-220ENST00000477528 ERICH4A6NGS2 130 aa16.5■□□□□ 0.23
HDAC6-220ENST00000477528 PRKAB2O43741 272 aa16.5■□□□□ 0.23
HDAC6-220ENST00000477528 NONOQ15233 471 aaKnown RBP eCLIP16.5■□□□□ 0.23
HDAC6-220ENST00000477528 SV2BQ7L1I2 683 aa16.5■□□□□ 0.23
HDAC6-220ENST00000477528 SMARCC2Q8TAQ2 1214 aa16.5■□□□□ 0.23
HDAC6-220ENST00000477528 NAP1L4Q99733 375 aaKnown RBP16.5■□□□□ 0.23
HDAC6-220ENST00000477528 KRT86O43790 486 aa16.5■□□□□ 0.23
HDAC6-220ENST00000477528 TBC1D22AQ8WUA7 517 aa16.5■□□□□ 0.23
HDAC6-220ENST00000477528 CYP19A1P11511 503 aaPredicted RBP16.5■□□□□ 0.23
HDAC6-220ENST00000477528 MRPL12P52815 198 aaKnown RBP16.5■□□□□ 0.23
HDAC6-220ENST00000477528 SPECC1LQ69YQ0 1117 aa16.5■□□□□ 0.23
HDAC6-220ENST00000477528 THRAP3Q9Y2W1 955 aaKnown RBP16.5■□□□□ 0.23
HDAC6-220ENST00000477528 RFX5P48382 616 aaPredicted RBP16.49■□□□□ 0.23
HDAC6-220ENST00000477528 TRMT44Q8IYL2 757 aaKnown RBP16.49■□□□□ 0.23
HDAC6-220ENST00000477528 VPS16Q9H269 839 aa16.49■□□□□ 0.23
HDAC6-220ENST00000477528 ZNF569Q5MCW4 686 aa16.49■□□□□ 0.23
HDAC6-220ENST00000477528 ZNF804BA4D1E1 1349 aa16.49■□□□□ 0.23
HDAC6-220ENST00000477528 ARHGAP23Q9P227 1491 aa16.49■□□□□ 0.23
HDAC6-220ENST00000477528 SCG2P13521 617 aa16.49■□□□□ 0.23
HDAC6-220ENST00000477528 PGBD1Q96JS3 809 aa16.49■□□□□ 0.23
HDAC6-220ENST00000477528 MMRN2Q9H8L6 949 aa16.49■□□□□ 0.23
HDAC6-220ENST00000477528 ZNF609O15014 1411 aa16.49■□□□□ 0.23
HDAC6-220ENST00000477528 CCNT1O60563 726 aaKnown RBP16.49■□□□□ 0.23
HDAC6-220ENST00000477528 MB21D2Q8IYB1 491 aaPredicted RBP16.49■□□□□ 0.23
HDAC6-220ENST00000477528 SYNE4Q8N205 404 aa16.49■□□□□ 0.23
HDAC6-220ENST00000477528 PLA2G12BQ9BX93 195 aa16.49■□□□□ 0.23
HDAC6-220ENST00000477528 PDE4DQ08499 809 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 DPCR1Q3MIW9 517 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 ERFEQ4G0M1 354 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 KIAA1524Q8TCG1 905 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 CCDC42Q96M95 316 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 PARP3Q9Y6F1 533 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 NRBP1Q9UHY1 535 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 SPDYE3A6NKU9 549 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 KIF5AQ12840 1032 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 BLIDQ8IZY5 108 aa16.48■□□□□ 0.23
HDAC6-220ENST00000477528 USP21Q9UK80 565 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms