RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 DPH2Q9BQC3 489 aaPredicted RBP7.5□□□□□ -1.21
UBR3-209ENST00000477461 ATP13A1Q9HD20 1204 aa7.5□□□□□ -1.21
UBR3-209ENST00000477461 PARP2Q9UGN5 583 aa7.5□□□□□ -1.21
UBR3-209ENST00000477461 F6X3S4 739 aa7.49□□□□□ -1.21
UBR3-209ENST00000477461 H3BS24 57 aa7.49□□□□□ -1.21
UBR3-209ENST00000477461 LIG3P49916 1009 aa7.49□□□□□ -1.21
UBR3-209ENST00000477461 LETMD1Q6P1Q0 360 aa7.49□□□□□ -1.21
UBR3-209ENST00000477461 CARS2Q9HA77 564 aaKnown RBP7.49□□□□□ -1.21
UBR3-209ENST00000477461 MAPK8IP1Q9UQF2 711 aa7.49□□□□□ -1.21
UBR3-209ENST00000477461 TLR6Q9Y2C9 796 aa7.49□□□□□ -1.21
UBR3-209ENST00000477461 ARID1BQ8NFD5 2236 aaPredicted RBP7.49□□□□□ -1.21
UBR3-209ENST00000477461 PITPNM2Q9BZ72 1349 aa7.49□□□□□ -1.21
UBR3-209ENST00000477461 PATL2C9JE40 543 aaKnown RBP7.48□□□□□ -1.21
UBR3-209ENST00000477461 GFRA2O00451 464 aa7.48□□□□□ -1.21
UBR3-209ENST00000477461 AGMOQ6ZNB7 445 aa7.48□□□□□ -1.21
UBR3-209ENST00000477461 SND1Q7KZF4 910 aaKnown RBP eCLIP7.48□□□□□ -1.21
UBR3-209ENST00000477461 MFSD2AQ8NA29 543 aa7.48□□□□□ -1.21
UBR3-209ENST00000477461 SEMA3GQ9NS98 782 aa7.48□□□□□ -1.21
UBR3-209ENST00000477461 PGRP06401 933 aa7.47□□□□□ -1.21
UBR3-209ENST00000477461 TFE3P19532 575 aaPredicted RBP7.47□□□□□ -1.21
UBR3-209ENST00000477461 CLCN7P51798 805 aa7.47□□□□□ -1.21
UBR3-209ENST00000477461 RPS26P62854 115 aaKnown RBP7.47□□□□□ -1.21
UBR3-209ENST00000477461 PSMD2Q13200 908 aa7.47□□□□□ -1.21
UBR3-209ENST00000477461 FYB2Q5VWT5 728 aa7.47□□□□□ -1.21
UBR3-209ENST00000477461 MFSD4AQ8N468 514 aa7.47□□□□□ -1.21
UBR3-209ENST00000477461 MIR1-1HGQ9H1L0 117 aa7.47□□□□□ -1.21
UBR3-209ENST00000477461 ZSWIM5Q9P217 1185 aa7.47□□□□□ -1.21
UBR3-209ENST00000477461 TJP2Q9UDY2 1190 aa7.47□□□□□ -1.21
UBR3-209ENST00000477461 CST3P01034 146 aaPredicted RBP7.46□□□□□ -1.22
UBR3-209ENST00000477461 UBE2FQ969M7 185 aa7.46□□□□□ -1.22
UBR3-209ENST00000477461 XPCQ01831 940 aaPredicted RBP7.45□□□□□ -1.22
UBR3-209ENST00000477461 TAGLNQ01995 201 aaKnown RBP7.45□□□□□ -1.22
UBR3-209ENST00000477461 TMEM40Q8WWA1 233 aa7.45□□□□□ -1.22
UBR3-209ENST00000477461 CTNND2Q9UQB3 1225 aa7.45□□□□□ -1.22
UBR3-209ENST00000477461 CAPN6Q9Y6Q1 641 aa7.45□□□□□ -1.22
UBR3-209ENST00000477461 WASH4PA8MWX3 477 aa7.44□□□□□ -1.22
UBR3-209ENST00000477461 FARP2O94887 1054 aaPredicted RBP7.44□□□□□ -1.22
UBR3-209ENST00000477461 PDIA4P13667 645 aaKnown RBP7.44□□□□□ -1.22
UBR3-209ENST00000477461 CAP2P40123 477 aa7.44□□□□□ -1.22
UBR3-209ENST00000477461 TAF1CQ15572 869 aaPredicted RBP7.44□□□□□ -1.22
UBR3-209ENST00000477461 KCNMB1Q16558 191 aa7.44□□□□□ -1.22
UBR3-209ENST00000477461 ZSWIM9Q86XI8 627 aa7.44□□□□□ -1.22
UBR3-209ENST00000477461 LIN37Q96GY3 246 aaPredicted RBP7.44□□□□□ -1.22
UBR3-209ENST00000477461 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.44□□□□□ -1.22
UBR3-209ENST00000477461 CORINQ9Y5Q5 1042 aa7.44□□□□□ -1.22
UBR3-209ENST00000477461 ST14Q9Y5Y6 855 aa7.44□□□□□ -1.22
UBR3-209ENST00000477461 LRRC10BA6NIK2 292 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 UPK3BL1B0FP48 263 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 UPK3BL2E5RIL1 263 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 CTSHP09668 335 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 ZNF865P0CJ78 1059 aaPredicted RBP7.43□□□□□ -1.22
UBR3-209ENST00000477461 DAB2P98082 770 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 TNK2Q07912 1038 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 MLANAQ16655 118 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 TSNAXIP1Q2TAA8 658 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 NPAS4Q8IUM7 802 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 FLAD1Q8NFF5 587 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 TMEM87BQ96K49 555 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 LMCD1Q9NZU5 365 aa7.43□□□□□ -1.22
UBR3-209ENST00000477461 ZNF503-AS2A6NEH8 195 aa7.42□□□□□ -1.22
UBR3-209ENST00000477461 JAG1P78504 1218 aa7.42□□□□□ -1.22
UBR3-209ENST00000477461 BNC2Q6ZN30 1099 aaPredicted RBP7.42□□□□□ -1.22
UBR3-209ENST00000477461 KSR1Q8IVT5 923 aa7.42□□□□□ -1.22
UBR3-209ENST00000477461 CYP7A1P22680 504 aa7.41□□□□□ -1.22
UBR3-209ENST00000477461 AFMP43652 599 aa7.41□□□□□ -1.22
UBR3-209ENST00000477461 RPL6Q02878 288 aaKnown RBP7.41□□□□□ -1.22
UBR3-209ENST00000477461 SLC6A19Q695T7 634 aa7.41□□□□□ -1.22
UBR3-209ENST00000477461 MRPL41Q8IXM3 137 aaKnown RBP7.41□□□□□ -1.22
UBR3-209ENST00000477461 PHC3Q8NDX5 983 aa7.41□□□□□ -1.22
UBR3-209ENST00000477461 ACSF2Q96CM8 615 aaPredicted RBP7.41□□□□□ -1.22
UBR3-209ENST00000477461 PLCG1P19174 1290 aa7.4□□□□□ -1.22
UBR3-209ENST00000477461 PDE4BQ07343 736 aa7.4□□□□□ -1.22
UBR3-209ENST00000477461 ZNF746Q6NUN9 644 aaPredicted RBP7.4□□□□□ -1.22
UBR3-209ENST00000477461 DNAJC14Q6Y2X3 702 aaPredicted RBP7.4□□□□□ -1.22
UBR3-209ENST00000477461 C22orf34Q6ZV56 151 aa7.4□□□□□ -1.22
UBR3-209ENST00000477461 MCATQ8IVS2 390 aaKnown RBP7.4□□□□□ -1.22
UBR3-209ENST00000477461 C19orf73Q9NVV2 129 aa7.4□□□□□ -1.22
UBR3-209ENST00000477461 SLAMF8Q9P0V8 285 aa7.4□□□□□ -1.22
UBR3-209ENST00000477461 USP31Q70CQ4 1352 aa7.4□□□□□ -1.22
UBR3-209ENST00000477461 MINDY4BA8MYZ0 360 aa7.39□□□□□ -1.23
UBR3-209ENST00000477461 PF4P02776 101 aa7.39□□□□□ -1.23
UBR3-209ENST00000477461 PKN1Q16512 942 aa7.39□□□□□ -1.23
UBR3-209ENST00000477461 MPZL3Q6UWV2 235 aa7.39□□□□□ -1.23
UBR3-209ENST00000477461 PRR23BQ6ZRT6 265 aa7.39□□□□□ -1.23
UBR3-209ENST00000477461 KIRREL1Q96J84 757 aa7.39□□□□□ -1.23
UBR3-209ENST00000477461 NOC4LQ9BVI4 516 aaKnown RBP7.39□□□□□ -1.23
UBR3-209ENST00000477461 TACC3Q9Y6A5 838 aa7.39□□□□□ -1.23
UBR3-209ENST00000477461 KRTAP4-8A0A0G2JLE6 195 aa7.38□□□□□ -1.23
UBR3-209ENST00000477461 RLBP1P12271 317 aa7.38□□□□□ -1.23
UBR3-209ENST00000477461 GBP2P32456 591 aaPredicted RBP7.38□□□□□ -1.23
UBR3-209ENST00000477461 CAMK2GQ13555 558 aaPredicted RBP7.38□□□□□ -1.23
UBR3-209ENST00000477461 TMEM67Q5HYA8 995 aa7.38□□□□□ -1.23
UBR3-209ENST00000477461 TMC4Q7Z404 712 aa7.38□□□□□ -1.23
UBR3-209ENST00000477461 TTC6Q86TZ1 520 aa7.38□□□□□ -1.23
UBR3-209ENST00000477461 CREG2Q8IUH2 290 aa7.38□□□□□ -1.23
UBR3-209ENST00000477461 Q96M66 194 aa7.38□□□□□ -1.23
UBR3-209ENST00000477461 SLC38A3Q99624 504 aa7.38□□□□□ -1.23
UBR3-209ENST00000477461 KCNK12Q9HB15 430 aa7.38□□□□□ -1.23
UBR3-209ENST00000477461 VTI1BQ9UEU0 232 aa7.38□□□□□ -1.23
UBR3-209ENST00000477461 CEP131Q9UPN4 1083 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms