RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 STXBP5LQ9Y2K9 1186 aa15.52■□□□□ 0.08
SKA3-206ENST00000475251 ZKSCAN1P17029 563 aaPredicted RBP15.51■□□□□ 0.07
SKA3-206ENST00000475251 SYN1P17600 705 aa15.51■□□□□ 0.07
SKA3-206ENST00000475251 BACE1P56817 501 aa15.51■□□□□ 0.07
SKA3-206ENST00000475251 MTX1Q13505 466 aa15.51■□□□□ 0.07
SKA3-206ENST00000475251 ZNF384Q8TF68 577 aa15.51■□□□□ 0.07
SKA3-206ENST00000475251 MEIS3Q99687 375 aa15.51■□□□□ 0.07
SKA3-206ENST00000475251 LRP2BPQ9P2M1 347 aa15.51■□□□□ 0.07
SKA3-206ENST00000475251 IGSF3O75054 1194 aa15.5■□□□□ 0.07
SKA3-206ENST00000475251 UQCRFS1P1P0C7P4 283 aa15.5■□□□□ 0.07
SKA3-206ENST00000475251 ARID4AP29374 1257 aaPredicted RBP15.5■□□□□ 0.07
SKA3-206ENST00000475251 HERVK_113P62684 666 aa15.5■□□□□ 0.07
SKA3-206ENST00000475251 TRIM32Q13049 653 aa15.5■□□□□ 0.07
SKA3-206ENST00000475251 CRACR2BQ8N4Y2 399 aaPredicted RBP15.5■□□□□ 0.07
SKA3-206ENST00000475251 LAMA3Q16787 3333 aa15.5■□□□□ 0.07
SKA3-206ENST00000475251 COL6A3P12111 3177 aa15.49■□□□□ 0.07
SKA3-206ENST00000475251 USP17L10C9JJH3 530 aa15.49■□□□□ 0.07
SKA3-206ENST00000475251 RGS2P41220 211 aa15.49■□□□□ 0.07
SKA3-206ENST00000475251 ATF7IPQ6VMQ6 1270 aa15.49■□□□□ 0.07
SKA3-206ENST00000475251 TBC1D9Q6ZT07 1266 aa15.49■□□□□ 0.07
SKA3-206ENST00000475251 FOXP4Q8IVH2 680 aaPredicted RBP15.49■□□□□ 0.07
SKA3-206ENST00000475251 CWC22Q9HCG8 908 aaKnown RBP15.49■□□□□ 0.07
SKA3-206ENST00000475251 PLXNB2O15031 1838 aa15.49■□□□□ 0.07
SKA3-206ENST00000475251 PFASO15067 1338 aa15.48■□□□□ 0.07
SKA3-206ENST00000475251 ZNF316A6NFI3 1004 aaPredicted RBP15.48■□□□□ 0.07
SKA3-206ENST00000475251 RRP1BQ14684 758 aaKnown RBP15.48■□□□□ 0.07
SKA3-206ENST00000475251 NAA16Q6N069 864 aaPredicted RBP15.48■□□□□ 0.07
SKA3-206ENST00000475251 PI16Q6UXB8 463 aa15.48■□□□□ 0.07
SKA3-206ENST00000475251 SH3RF3Q8TEJ3 882 aaPredicted RBP15.48■□□□□ 0.07
SKA3-206ENST00000475251 ARHGAP45Q92619 1136 aa15.48■□□□□ 0.07
SKA3-206ENST00000475251 P2RX7Q99572 595 aaKnown RBP15.48■□□□□ 0.07
SKA3-206ENST00000475251 APBA2Q99767 749 aa15.48■□□□□ 0.07
SKA3-206ENST00000475251 MTMR10Q9NXD2 777 aa15.48■□□□□ 0.07
SKA3-206ENST00000475251 MAST2Q6P0Q8 1798 aa15.47■□□□□ 0.07
SKA3-206ENST00000475251 GLRX3O76003 335 aaKnown RBP15.47■□□□□ 0.07
SKA3-206ENST00000475251 HLA-DOAP06340 250 aa15.47■□□□□ 0.07
SKA3-206ENST00000475251 COL6A1P12109 1028 aa15.47■□□□□ 0.07
SKA3-206ENST00000475251 ERVK-9P63128 1117 aa15.47■□□□□ 0.07
SKA3-206ENST00000475251 ERVK-24P63145 666 aa15.47■□□□□ 0.07
SKA3-206ENST00000475251 CACNB2Q08289 660 aaPredicted RBP15.47■□□□□ 0.07
SKA3-206ENST00000475251 G3BP1Q13283 466 aaKnown RBP eCLIP15.47■□□□□ 0.07
SKA3-206ENST00000475251 Q7L0L9 218 aa15.47■□□□□ 0.07
SKA3-206ENST00000475251 METTL16Q86W50 562 aaKnown RBP15.47■□□□□ 0.07
SKA3-206ENST00000475251 AATFQ9NY61 560 aaKnown RBP eCLIP15.47■□□□□ 0.07
SKA3-206ENST00000475251 MCAMP43121 646 aa15.46■□□□□ 0.07
SKA3-206ENST00000475251 PPP4CP60510 307 aa15.46■□□□□ 0.07
SKA3-206ENST00000475251 CCNA1P78396 465 aa15.46■□□□□ 0.07
SKA3-206ENST00000475251 USP17L2Q6R6M4 530 aa15.46■□□□□ 0.07
SKA3-206ENST00000475251 GPR142Q7Z601 462 aa15.46■□□□□ 0.07
SKA3-206ENST00000475251 PLEKHH3Q7Z736 793 aa15.46■□□□□ 0.07
SKA3-206ENST00000475251 TRMT2AQ8IZ69 625 aaKnown RBP15.46■□□□□ 0.07
SKA3-206ENST00000475251 CDCA7LQ96GN5 454 aa15.46■□□□□ 0.07
SKA3-206ENST00000475251 TXNRD2Q9NNW7 524 aa15.46■□□□□ 0.07
SKA3-206ENST00000475251 RBPJLQ9UBG7 517 aa15.46■□□□□ 0.07
SKA3-206ENST00000475251 FLT1P17948 1338 aa15.45■□□□□ 0.06
SKA3-206ENST00000475251 MSCO60682 206 aa15.45■□□□□ 0.06
SKA3-206ENST00000475251 CCDC158Q5M9N0 1113 aa15.45■□□□□ 0.06
SKA3-206ENST00000475251 MORN1Q5T089 497 aa15.45■□□□□ 0.06
SKA3-206ENST00000475251 TGFBRAP1Q8WUH2 860 aa15.45■□□□□ 0.06
SKA3-206ENST00000475251 USP6NLQ92738 828 aa15.45■□□□□ 0.06
SKA3-206ENST00000475251 LBHD1Q9BQE6 289 aaPredicted RBP15.45■□□□□ 0.06
SKA3-206ENST00000475251 PAGR1Q9BTK6 254 aa15.45■□□□□ 0.06
SKA3-206ENST00000475251 ZBTB21Q9ULJ3 1066 aa15.45■□□□□ 0.06
SKA3-206ENST00000475251 GDF11O95390 407 aa15.44■□□□□ 0.06
SKA3-206ENST00000475251 GNAI2P04899 355 aa15.44■□□□□ 0.06
SKA3-206ENST00000475251 TTC39AQ5SRH9 613 aa15.44■□□□□ 0.06
SKA3-206ENST00000475251 MFSD14CQ5VZR4 134 aa15.44■□□□□ 0.06
SKA3-206ENST00000475251 LHX8Q68G74 356 aa15.44■□□□□ 0.06
SKA3-206ENST00000475251 CERS3Q8IU89 383 aa15.44■□□□□ 0.06
SKA3-206ENST00000475251 MAPKAPK5Q8IW41 473 aa15.44■□□□□ 0.06
SKA3-206ENST00000475251 PORCNQ9H237 461 aa15.44■□□□□ 0.06
SKA3-206ENST00000475251 RABGAP1Q9Y3P9 1069 aa15.44■□□□□ 0.06
SKA3-206ENST00000475251 SIPA1L1O43166 1804 aa15.44■□□□□ 0.06
SKA3-206ENST00000475251 FOCADQ5VW36 1801 aa15.43■□□□□ 0.06
SKA3-206ENST00000475251 IPO8O15397 1037 aaKnown RBP15.43■□□□□ 0.06
SKA3-206ENST00000475251 CCND3P30281 292 aaPredicted RBP15.43■□□□□ 0.06
SKA3-206ENST00000475251 USP14P54578 494 aa15.43■□□□□ 0.06
SKA3-206ENST00000475251 MAP2K5Q13163 448 aa15.43■□□□□ 0.06
SKA3-206ENST00000475251 LRRC26Q2I0M4 334 aa15.43■□□□□ 0.06
SKA3-206ENST00000475251 Q3C1V9 767 aa15.43■□□□□ 0.06
SKA3-206ENST00000475251 FAM109BQ6ICB4 259 aaPredicted RBP15.43■□□□□ 0.06
SKA3-206ENST00000475251 EDC3Q96F86 508 aaKnown RBP15.43■□□□□ 0.06
SKA3-206ENST00000475251 FEZ1Q99689 392 aa15.43■□□□□ 0.06
SKA3-206ENST00000475251 DNAJC18Q9H819 358 aa15.43■□□□□ 0.06
SKA3-206ENST00000475251 GPR108Q9NPR9 543 aa15.43■□□□□ 0.06
SKA3-206ENST00000475251 PRKAG2Q9UGJ0 569 aa15.43■□□□□ 0.06
SKA3-206ENST00000475251 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.43■□□□□ 0.06
SKA3-206ENST00000475251 IVNS1ABPQ9Y6Y0 642 aa15.43■□□□□ 0.06
SKA3-206ENST00000475251 USP17L15C9J2P7 530 aa15.42■□□□□ 0.06
SKA3-206ENST00000475251 USP17L13C9JLJ4 530 aa15.42■□□□□ 0.06
SKA3-206ENST00000475251 USP17L11C9JVI0 530 aa15.42■□□□□ 0.06
SKA3-206ENST00000475251 USP17L18D6R9N7 530 aa15.42■□□□□ 0.06
SKA3-206ENST00000475251 USP17L22D6RA61 530 aa15.42■□□□□ 0.06
SKA3-206ENST00000475251 USP17L17D6RBQ6 530 aa15.42■□□□□ 0.06
SKA3-206ENST00000475251 USP17L19D6RCP7 530 aa15.42■□□□□ 0.06
SKA3-206ENST00000475251 USP17L20D6RJB6 530 aa15.42■□□□□ 0.06
SKA3-206ENST00000475251 RARSP54136 660 aaKnown RBP15.42■□□□□ 0.06
SKA3-206ENST00000475251 MDM2Q00987 491 aaPredicted RBP15.42■□□□□ 0.06
SKA3-206ENST00000475251 USP17L24Q0WX57 530 aa15.42■□□□□ 0.06
SKA3-206ENST00000475251 CCL14Q16627 93 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms