RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 ANO1Q5XXA6 986 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 RCSD1Q6JBY9 416 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 CCAR1Q8IX12 1150 aaKnown RBP14.17□□□□□ -0.14
SYNE1-222ENST00000474655 NUP133Q8WUM0 1156 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.17□□□□□ -0.14
SYNE1-222ENST00000474655 TCP11L1Q9NUJ3 509 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 ZNF646O15015 1829 aaPredicted RBP14.17□□□□□ -0.14
SYNE1-222ENST00000474655 UBE2Q2LH0YL09 131 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 SPTLC2O15270 562 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 PRPF3O43395 683 aaKnown RBP14.17□□□□□ -0.14
SYNE1-222ENST00000474655 BTDP43251 543 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 ME1P48163 572 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 RHBDL3P58872 404 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 FAM160A1Q05DH4 1040 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 SLC39A14Q15043 492 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 DGKHQ86XP1 1220 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 FAM43AQ8N2R8 423 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 RNF214Q8ND24 703 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 TGFBRAP1Q8WUH2 860 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 CAMKK2Q96RR4 588 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 MAP3K14Q99558 947 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 FOXP1Q9H334 677 aaPredicted RBP14.17□□□□□ -0.14
SYNE1-222ENST00000474655 GOLPH3LQ9H4A5 285 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 CTAGE5O15320 804 aa14.16□□□□□ -0.14
SYNE1-222ENST00000474655 STK38Q15208 465 aa14.16□□□□□ -0.14
SYNE1-222ENST00000474655 CCDC178Q5BJE1 867 aa14.16□□□□□ -0.14
SYNE1-222ENST00000474655 STYK1Q6J9G0 422 aa14.16□□□□□ -0.14
SYNE1-222ENST00000474655 AMOTL1Q8IY63 956 aa14.16□□□□□ -0.14
SYNE1-222ENST00000474655 ZC3H12CQ9C0D7 883 aaKnown RBP14.16□□□□□ -0.14
SYNE1-222ENST00000474655 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.16□□□□□ -0.14
SYNE1-222ENST00000474655 SLX4Q8IY92 1834 aa14.16□□□□□ -0.14
SYNE1-222ENST00000474655 TSPY2A6NKD2 308 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 PPP6R2O75170 966 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 PTPAQ15257 358 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 SLC15A2Q16348 729 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 PKN1Q16512 942 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 CAMK4Q16566 473 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 HS1BP3Q53T59 392 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 FAM47AQ5JRC9 791 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 AXDND1Q5T1B0 1012 aaPredicted RBP14.15□□□□□ -0.14
SYNE1-222ENST00000474655 DPP8Q6V1X1 898 aaPredicted RBP14.15□□□□□ -0.14
SYNE1-222ENST00000474655 CCDC73Q6ZRK6 1079 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 TMTC3Q6ZXV5 915 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 NOSTRINQ8IVI9 506 aa14.15□□□□□ -0.14
SYNE1-222ENST00000474655 NMT2O60551 498 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 GTF2IP78347 998 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 POTEAQ6S8J7 498 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 FMR1NBQ8N0W7 255 aaPredicted RBP14.14□□□□□ -0.15
SYNE1-222ENST00000474655 MRPS27Q92552 414 aaKnown RBP14.14□□□□□ -0.15
SYNE1-222ENST00000474655 IL17RBQ9NRM6 502 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 PLCD1P51178 756 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 TFAP4Q01664 338 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 TYRO3Q06418 890 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 SAFBQ15424 915 aaKnown RBP eCLIP14.14□□□□□ -0.15
SYNE1-222ENST00000474655 SF3A1Q15459 793 aaKnown RBP14.14□□□□□ -0.15
SYNE1-222ENST00000474655 TEX11Q8IYF3 940 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 CMTR1Q8N1G2 835 aaKnown RBP14.14□□□□□ -0.15
SYNE1-222ENST00000474655 FSIP1Q8NA03 581 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 ZNF287Q9HBT7 754 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 DAGLAQ9Y4D2 1042 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 MRVI1Q9Y6F6 885 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 FLT1P17948 1338 aa14.14□□□□□ -0.15
SYNE1-222ENST00000474655 MYH8P13535 1937 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 BTBD18B2RXH4 712 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 RIMBP2O15034 1052 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 PLEKHA8P1O95397 391 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 RASA1P20936 1047 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 CMA1P23946 247 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 OLFM4Q6UX06 510 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 C16orf86Q6ZW13 317 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 MAPKAPK5Q8IW41 473 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 DIS3L2Q8IYB7 885 aaKnown RBP14.13□□□□□ -0.15
SYNE1-222ENST00000474655 CCDC82Q8N4S0 544 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 CERS5Q8N5B7 392 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 TRIM44Q96DX7 344 aaPredicted RBP14.13□□□□□ -0.15
SYNE1-222ENST00000474655 DYNLL2Q96FJ2 89 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 EYA3Q99504 573 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 TMX4Q9H1E5 349 aaPredicted RBP14.13□□□□□ -0.15
SYNE1-222ENST00000474655 ANO8Q9HCE9 1232 aaPredicted RBP14.13□□□□□ -0.15
SYNE1-222ENST00000474655 MORC2Q9Y6X9 1032 aaPredicted RBP14.13□□□□□ -0.15
SYNE1-222ENST00000474655 CNTNAP5Q8WYK1 1306 aa14.13□□□□□ -0.15
SYNE1-222ENST00000474655 FAM237AA0A1B0GTK4 181 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 CAVIN2O95810 425 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 XBP1P17861 261 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 AKAP17AQ02040 695 aaKnown RBP14.12□□□□□ -0.15
SYNE1-222ENST00000474655 GNL2Q13823 731 aaKnown RBP14.12□□□□□ -0.15
SYNE1-222ENST00000474655 MSL1Q68DK7 614 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 PODNQ7Z5L7 613 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 CKAP2LQ8IYA6 745 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 JMYQ8N9B5 988 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 CTCFLQ8NI51 663 aaPredicted RBP14.12□□□□□ -0.15
SYNE1-222ENST00000474655 SHISA4Q96DD7 197 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 PHF20Q9BVI0 1012 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 MKNK2Q9HBH9 465 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 KCNJ14Q9UNX9 436 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 SNED1Q8TER0 1413 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 SCN9AQ15858 1988 aa14.12□□□□□ -0.15
SYNE1-222ENST00000474655 H0YIN7 160 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 KINO60870 393 aaKnown RBP14.11□□□□□ -0.15
SYNE1-222ENST00000474655 TOB1P50616 345 aaPredicted RBP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms