RNA–Protein interactions for RNA: ENST00000474455.1

SMIM11A-204, Transcript of small integral membrane protein 11A, humanhuman

TSL 1 (best)

Gene SMIM11A, Length 1,857 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-204ENST00000474455 SH3BP5LQ7L8J4 393 aa24.28■■□□□ 1.48
SMIM11A-204ENST00000474455 SLC44A5Q8NCS7 719 aa24.28■■□□□ 1.48
SMIM11A-204ENST00000474455 NCOA7Q8NI08 942 aa24.28■■□□□ 1.48
SMIM11A-204ENST00000474455 CHAMP1Q96JM3 812 aa24.28■■□□□ 1.48
SMIM11A-204ENST00000474455 GPHNQ9NQX3 736 aaPredicted RBP24.28■■□□□ 1.48
SMIM11A-204ENST00000474455 TOMM22Q9NS69 142 aa24.28■■□□□ 1.48
SMIM11A-204ENST00000474455 GPRC5DQ9NZD1 345 aa24.28■■□□□ 1.48
SMIM11A-204ENST00000474455 DDTLA6NHG4 134 aaPredicted RBP24.28■■□□□ 1.48
SMIM11A-204ENST00000474455 EXOSC10Q01780 885 aaKnown RBP24.28■■□□□ 1.48
SMIM11A-204ENST00000474455 USP48Q86UV5 1035 aa24.28■■□□□ 1.48
SMIM11A-204ENST00000474455 PTMAP06454 111 aaKnown RBP24.27■■□□□ 1.48
SMIM11A-204ENST00000474455 SPDYE2Q495Y8 402 aa24.27■■□□□ 1.48
SMIM11A-204ENST00000474455 DHX32Q7L7V1 743 aaKnown RBP24.27■■□□□ 1.48
SMIM11A-204ENST00000474455 TRPM4Q8TD43 1214 aa24.27■■□□□ 1.48
SMIM11A-204ENST00000474455 VEZTQ9HBM0 779 aa24.27■■□□□ 1.48
SMIM11A-204ENST00000474455 ATP6V1DQ9Y5K8 247 aa24.27■■□□□ 1.48
SMIM11A-204ENST00000474455 UQCRHLA0A096LP55 91 aa24.26■■□□□ 1.47
SMIM11A-204ENST00000474455 KDM4AO75164 1064 aa24.26■■□□□ 1.47
SMIM11A-204ENST00000474455 UQCRHP07919 91 aa24.26■■□□□ 1.47
SMIM11A-204ENST00000474455 TOB2Q14106 344 aaPredicted RBP24.26■■□□□ 1.47
SMIM11A-204ENST00000474455 ZSWIM5Q9P217 1185 aa24.26■■□□□ 1.47
SMIM11A-204ENST00000474455 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.26■■□□□ 1.47
SMIM11A-204ENST00000474455 Q6ZUG5 572 aa24.26■■□□□ 1.47
SMIM11A-204ENST00000474455 RALYLQ86SE5 291 aaKnown RBP24.26■■□□□ 1.47
SMIM11A-204ENST00000474455 RNF214Q8ND24 703 aa24.26■■□□□ 1.47
SMIM11A-204ENST00000474455 TRDNQ13061 729 aa24.25■■□□□ 1.47
SMIM11A-204ENST00000474455 KIF4BQ2VIQ3 1234 aa24.25■■□□□ 1.47
SMIM11A-204ENST00000474455 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.25■■□□□ 1.47
SMIM11A-204ENST00000474455 H7C1D1 291 aa24.24■■□□□ 1.47
SMIM11A-204ENST00000474455 FGRP09769 529 aa24.24■■□□□ 1.47
SMIM11A-204ENST00000474455 ZSCAN22P10073 491 aaPredicted RBP24.24■■□□□ 1.47
SMIM11A-204ENST00000474455 HIRAP54198 1017 aaPredicted RBP24.24■■□□□ 1.47
SMIM11A-204ENST00000474455 CDAN1Q8IWY9 1227 aa24.24■■□□□ 1.47
SMIM11A-204ENST00000474455 ZKSCAN3Q9BRR0 538 aa24.24■■□□□ 1.47
SMIM11A-204ENST00000474455 CNTNAP1P78357 1384 aa24.24■■□□□ 1.47
SMIM11A-204ENST00000474455 PRC1O43663 620 aa24.24■■□□□ 1.47
SMIM11A-204ENST00000474455 LIMCH1Q9UPQ0 1083 aa24.24■■□□□ 1.47
SMIM11A-204ENST00000474455 GADD45BO75293 160 aaPredicted RBP24.23■■□□□ 1.47
SMIM11A-204ENST00000474455 LARGE1O95461 756 aa24.23■■□□□ 1.47
SMIM11A-204ENST00000474455 HMGB1P09429 215 aaKnown RBP24.23■■□□□ 1.47
SMIM11A-204ENST00000474455 UBE2HP62256 183 aa24.23■■□□□ 1.47
SMIM11A-204ENST00000474455 FAM47AQ5JRC9 791 aa24.23■■□□□ 1.47
SMIM11A-204ENST00000474455 ROBO3Q96MS0 1386 aa24.23■■□□□ 1.47
SMIM11A-204ENST00000474455 FAM196BA6NMK8 535 aa24.22■■□□□ 1.47
SMIM11A-204ENST00000474455 ZSCAN29Q8IWY8 852 aaPredicted RBP24.22■■□□□ 1.47
SMIM11A-204ENST00000474455 AMOTL1Q8IY63 956 aa24.22■■□□□ 1.47
SMIM11A-204ENST00000474455 RNF41Q9H4P4 317 aaPredicted RBP24.22■■□□□ 1.47
SMIM11A-204ENST00000474455 SENP2Q9HC62 589 aa24.22■■□□□ 1.47
SMIM11A-204ENST00000474455 RANBP6O60518 1105 aaKnown RBP24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 CDK8P49336 464 aa24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 KRT23Q9C075 422 aa24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 TMEM39BQ9GZU3 492 aa24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 TMOD2Q9NZR1 351 aa24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 HACL1Q9UJ83 578 aa24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 MYO1BO43795 1136 aa24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 PDIA4P13667 645 aaKnown RBP24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 C16orf86Q6ZW13 317 aa24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 BRF1Q92994 677 aa24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 CNNM2Q9H8M5 875 aa24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 TPCN1Q9ULQ1 816 aa24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.21■■□□□ 1.47
SMIM11A-204ENST00000474455 DTNBO60941 627 aa24.2■■□□□ 1.46
SMIM11A-204ENST00000474455 GABPAQ06546 454 aa24.2■■□□□ 1.46
SMIM11A-204ENST00000474455 DPY19L2Q6NUT2 758 aa24.2■■□□□ 1.46
SMIM11A-204ENST00000474455 TTC6Q86TZ1 520 aa24.2■■□□□ 1.46
SMIM11A-204ENST00000474455 DNAJC18Q9H819 358 aa24.2■■□□□ 1.46
SMIM11A-204ENST00000474455 NMT2O60551 498 aa24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 ENTPD3O75355 529 aa24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 NPM3O75607 178 aaKnown RBP24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 SLC3A2P08195 630 aaKnown RBP24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 MMP14P50281 582 aa24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 PDE4BQ07343 736 aa24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 ZMYND15Q9H091 742 aa24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 MKNK2Q9HBH9 465 aa24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 ORC4O43929 436 aa24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 APOBRQ0VD83 1088 aa24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 IGDCC4Q8TDY8 1250 aa24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 ZSCAN31Q96LW9 406 aaPredicted RBP24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 ALDH8A1Q9H2A2 487 aaPredicted RBP24.19■■□□□ 1.46
SMIM11A-204ENST00000474455 GLTPD2A6NH11 291 aa24.18■■□□□ 1.46
SMIM11A-204ENST00000474455 STX6O43752 255 aa24.18■■□□□ 1.46
SMIM11A-204ENST00000474455 RASA1P20936 1047 aa24.18■■□□□ 1.46
SMIM11A-204ENST00000474455 FAM151AQ8WW52 585 aa24.18■■□□□ 1.46
SMIM11A-204ENST00000474455 ESR2Q92731 530 aa24.18■■□□□ 1.46
SMIM11A-204ENST00000474455 PRIMPOLQ96LW4 560 aa24.18■■□□□ 1.46
SMIM11A-204ENST00000474455 AGXT2Q9BYV1 514 aa24.18■■□□□ 1.46
SMIM11A-204ENST00000474455 FGD1P98174 961 aa24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 ME3Q16798 604 aa24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 PIBF1Q8WXW3 757 aa24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 SERPINB13Q9UIV8 391 aa24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 SMC3Q9UQE7 1217 aa24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 F13A1P00488 732 aa24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 HLA-DOAP06340 250 aa24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 ANGEL2Q5VTE6 544 aaKnown RBP24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 CSRNP1Q96S65 589 aa24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 DHX36Q9H2U1 1008 aaKnown RBP24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 PGAP2Q9UHJ9 254 aa24.17■■□□□ 1.46
SMIM11A-204ENST00000474455 TPM3P06753 285 aa24.16■■□□□ 1.46
SMIM11A-204ENST00000474455 LMOD1P29536 600 aaPredicted RBP24.16■■□□□ 1.46
SMIM11A-204ENST00000474455 HMGN5P82970 282 aaKnown RBP24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms