RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 BACE1P56817 501 aa13.47□□□□□ -0.25
SEMA4D-216ENST00000474258 IRF5Q13568 498 aa13.47□□□□□ -0.25
SEMA4D-216ENST00000474258 RPAP2Q8IXW5 612 aaPredicted RBP13.47□□□□□ -0.25
SEMA4D-216ENST00000474258 MIGA1Q8NAN2 632 aa13.47□□□□□ -0.25
SEMA4D-216ENST00000474258 PXYLP1Q8TE99 480 aa13.47□□□□□ -0.25
SEMA4D-216ENST00000474258 ASCC2Q9H1I8 757 aaPredicted RBP13.47□□□□□ -0.25
SEMA4D-216ENST00000474258 ANTXR1Q9H6X2 564 aa13.47□□□□□ -0.25
SEMA4D-216ENST00000474258 TMOD4Q9NZQ9 345 aa13.47□□□□□ -0.25
SEMA4D-216ENST00000474258 SAP30BPQ9UHR5 308 aaKnown RBP13.47□□□□□ -0.25
SEMA4D-216ENST00000474258 NDUFB9Q9Y6M9 179 aa13.47□□□□□ -0.25
SEMA4D-216ENST00000474258 HMMRO75330 724 aa13.46□□□□□ -0.25
SEMA4D-216ENST00000474258 MTMR2Q13614 643 aa13.46□□□□□ -0.25
SEMA4D-216ENST00000474258 TTF1Q15361 905 aaPredicted RBP13.46□□□□□ -0.25
SEMA4D-216ENST00000474258 CLASRPQ8N2M8 674 aaKnown RBP13.46□□□□□ -0.25
SEMA4D-216ENST00000474258 SHISA4Q96DD7 197 aa13.46□□□□□ -0.25
SEMA4D-216ENST00000474258 KIF1BPQ96EK5 621 aa13.46□□□□□ -0.25
SEMA4D-216ENST00000474258 IL1RAPL2Q9NP60 686 aa13.46□□□□□ -0.25
SEMA4D-216ENST00000474258 DDX19BQ9UMR2 479 aa13.46□□□□□ -0.25
SEMA4D-216ENST00000474258 MYH7P12883 1935 aa13.46□□□□□ -0.25
SEMA4D-216ENST00000474258 NAV1Q8NEY1 1877 aa13.46□□□□□ -0.26
SEMA4D-216ENST00000474258 PLXNB2O15031 1838 aa13.46□□□□□ -0.26
SEMA4D-216ENST00000474258 USP17L10C9JJH3 530 aa13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 GDF11O95390 407 aa13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 ELNP15502 786 aa13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 HOXA7P31268 230 aaPredicted RBP13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 IRX3P78415 501 aaPredicted RBP13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 JAG1P78504 1218 aa13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 UNC93B1Q9H1C4 597 aa13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 CHMP4BQ9H444 224 aaKnown RBP13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 PCDH10Q9P2E7 1040 aa13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 ZBTB21Q9ULJ3 1066 aa13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 COG6Q9Y2V7 657 aa13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 GTF3C3Q9Y5Q9 886 aa13.45□□□□□ -0.26
SEMA4D-216ENST00000474258 SGPL1O95470 568 aa13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 INHAP05111 366 aa13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 IFIT2P09913 472 aaKnown RBP13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 CAPN2P17655 700 aa13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 HABP4Q5JVS0 413 aaKnown RBP13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 TATDN1Q6P1N9 297 aa13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 TTC6Q86TZ1 520 aa13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 EHD4Q9H223 541 aa13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 ZBTB40Q9NUA8 1239 aa13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 SERPINB13Q9UIV8 391 aa13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 TAOK2Q9UL54 1235 aa13.44□□□□□ -0.26
SEMA4D-216ENST00000474258 BAZ2AQ9UIF9 1905 aaKnown RBP13.43□□□□□ -0.26
SEMA4D-216ENST00000474258 APBB1O00213 710 aa13.43□□□□□ -0.26
SEMA4D-216ENST00000474258 RAB11FIP3O75154 756 aa13.43□□□□□ -0.26
SEMA4D-216ENST00000474258 SHROOM1Q2M3G4 852 aaPredicted RBP13.43□□□□□ -0.26
SEMA4D-216ENST00000474258 USP17L2Q6R6M4 530 aa13.43□□□□□ -0.26
SEMA4D-216ENST00000474258 U2AF1L4Q8WU68 220 aaKnown RBP13.43□□□□□ -0.26
SEMA4D-216ENST00000474258 DPF3Q92784 378 aa13.43□□□□□ -0.26
SEMA4D-216ENST00000474258 P2RX7Q99572 595 aaKnown RBP13.43□□□□□ -0.26
SEMA4D-216ENST00000474258 MORF4L1Q9UBU8 362 aa13.43□□□□□ -0.26
SEMA4D-216ENST00000474258 MAGEB6P1A0A0J9YX57 407 aa13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 GH2P01242 217 aa13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 POLR3DP05423 398 aaPredicted RBP13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 HERVK_113P62684 666 aa13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 CERKLQ49MI3 558 aaPredicted RBP13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 SLC9C2Q5TAH2 1124 aa13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 UBE2Q1Q7Z7E8 422 aa13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 SIRT2Q8IXJ6 389 aa13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 RIOK1Q9BRS2 568 aaKnown RBP13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 HTATIP2Q9BUP3 242 aa13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 EMILIN3Q9NT22 766 aa13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 GJD2Q9UKL4 321 aa13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 DDX60LQ5H9U9 1706 aaKnown RBP13.42□□□□□ -0.26
SEMA4D-216ENST00000474258 H0YGN5 161 aa13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 FARP2O94887 1054 aaPredicted RBP13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 TFRCP02786 760 aaKnown RBP13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 PDE6AP16499 860 aa13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 GPRC5AQ8NFJ5 357 aa13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 GTF3C2Q8WUA4 911 aaPredicted RBP13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 DEFB118Q96PH6 123 aa13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 DNAJC2Q99543 621 aaKnown RBP13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 CRNKL1Q9BZJ0 848 aaKnown RBP13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 CABP5Q9NP86 173 aa13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 PAK6Q9NQU5 681 aaPredicted RBP13.41□□□□□ -0.26
SEMA4D-216ENST00000474258 GOLIM4O00461 696 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 HMGCRP04035 888 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 PLCD1P51178 756 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 USP14P54578 494 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 RAB3GAP1Q15042 981 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 ABCB5Q2M3G0 1257 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 ERICH6BQ5W0A0 696 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 FEZ1Q99689 392 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 BCL11AQ9H165 835 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 TXNRD2Q9NNW7 524 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 RBPJLQ9UBG7 517 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 ALPK3Q96L96 1907 aa13.4□□□□□ -0.26
SEMA4D-216ENST00000474258 ZNF532Q9HCE3 1301 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 USP17L15C9J2P7 530 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 USP17L13C9JLJ4 530 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 USP17L11C9JVI0 530 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 USP17L18D6R9N7 530 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 USP17L22D6RA61 530 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 USP17L17D6RBQ6 530 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 USP17L19D6RCP7 530 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 USP17L20D6RJB6 530 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 NEFLP07196 543 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms