RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 FAM227BQ96M60 508 aa16.43■□□□□ 0.22
USF1-205ENST00000473969 DNAJC18Q9H819 358 aa16.43■□□□□ 0.22
USF1-205ENST00000473969 ZNF287Q9HBT7 754 aa16.43■□□□□ 0.22
USF1-205ENST00000473969 TSKSQ9UJT2 592 aa16.43■□□□□ 0.22
USF1-205ENST00000473969 KCNH4Q9UQ05 1017 aa16.43■□□□□ 0.22
USF1-205ENST00000473969 FOCADQ5VW36 1801 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 OTOFQ9HC10 1997 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 TRIM75PA6NK02 468 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 SBK1Q52WX2 424 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 CCDC129Q6ZRS4 1044 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 FASTKD5Q7L8L6 764 aaKnown RBP16.42■□□□□ 0.22
USF1-205ENST00000473969 ZNF280CQ8ND82 737 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 BRI3BPQ8WY22 251 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 PPP4R2Q9NY27 417 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 ZBTB21Q9ULJ3 1066 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 AFG3L2Q9Y4W6 797 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 MYH1P12882 1939 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 CDK5RAP2Q96SN8 1893 aa16.42■□□□□ 0.22
USF1-205ENST00000473969 CYP2D7A0A087X1C5 515 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 A0A0D9SFI3 127 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 IGF2BP3O00425 579 aaKnown RBP eCLIP16.41■□□□□ 0.22
USF1-205ENST00000473969 TBC1D8O95759 1140 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 GH2P01242 217 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 GABPAQ06546 454 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 SPP2Q13103 211 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 RRP1BQ14684 758 aaKnown RBP16.41■□□□□ 0.22
USF1-205ENST00000473969 RAB3GAP1Q15042 981 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 CWC27Q6UX04 472 aaKnown RBP16.41■□□□□ 0.22
USF1-205ENST00000473969 GADL1Q6ZQY3 521 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 RUFY2Q8WXA3 655 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 DYNLL2Q96FJ2 89 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 MKNK2Q9HBH9 465 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 ZFYVE28Q9HCC9 887 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 PRDM10Q9NQV6 1147 aa16.41■□□□□ 0.22
USF1-205ENST00000473969 NAV1Q8NEY1 1877 aa16.4■□□□□ 0.22
USF1-205ENST00000473969 GSPT1P15170 499 aaKnown RBP16.4■□□□□ 0.22
USF1-205ENST00000473969 SHMT1P34896 483 aa16.4■□□□□ 0.22
USF1-205ENST00000473969 CDK8P49336 464 aa16.4■□□□□ 0.22
USF1-205ENST00000473969 TAF1CQ15572 869 aaPredicted RBP16.4■□□□□ 0.22
USF1-205ENST00000473969 C16orf86Q6ZW13 317 aa16.4■□□□□ 0.22
USF1-205ENST00000473969 CCDC84Q86UT8 332 aaPredicted RBP16.4■□□□□ 0.22
USF1-205ENST00000473969 CCDC17Q96LX7 622 aa16.4■□□□□ 0.22
USF1-205ENST00000473969 PTPN18Q99952 460 aa16.4■□□□□ 0.22
USF1-205ENST00000473969 ZCCHC17Q9NP64 241 aaKnown RBP16.4■□□□□ 0.22
USF1-205ENST00000473969 CCDC171Q6TFL3 1326 aa16.4■□□□□ 0.22
USF1-205ENST00000473969 A0A0G2JLL6 359 aaPredicted RBP16.39■□□□□ 0.21
USF1-205ENST00000473969 BTBD19C9JJ37 291 aa16.39■□□□□ 0.21
USF1-205ENST00000473969 CAPN15O75808 1086 aa16.39■□□□□ 0.21
USF1-205ENST00000473969 PRRT2Q7Z6L0 340 aaPredicted RBP16.39■□□□□ 0.21
USF1-205ENST00000473969 ANKRD23Q86SG2 305 aa16.39■□□□□ 0.21
USF1-205ENST00000473969 STK11IPQ8N1F8 1099 aa16.39■□□□□ 0.21
USF1-205ENST00000473969 WDR18Q9BV38 432 aa16.39■□□□□ 0.21
USF1-205ENST00000473969 EPB41L4AQ9HCS5 686 aaPredicted RBP16.39■□□□□ 0.21
USF1-205ENST00000473969 TMOD4Q9NZQ9 345 aa16.39■□□□□ 0.21
USF1-205ENST00000473969 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.39■□□□□ 0.21
USF1-205ENST00000473969 C19orf81C9J6K1 198 aa16.38■□□□□ 0.21
USF1-205ENST00000473969 USP17L10C9JJH3 530 aa16.38■□□□□ 0.21
USF1-205ENST00000473969 EVX2Q03828 476 aa16.38■□□□□ 0.21
USF1-205ENST00000473969 PDE4BQ07343 736 aa16.38■□□□□ 0.21
USF1-205ENST00000473969 TMEM179Q6ZVK1 233 aa16.38■□□□□ 0.21
USF1-205ENST00000473969 ZNF444Q8N0Y2 327 aaPredicted RBP16.38■□□□□ 0.21
USF1-205ENST00000473969 FAM43AQ8N2R8 423 aa16.38■□□□□ 0.21
USF1-205ENST00000473969 SLC44A5Q8NCS7 719 aa16.38■□□□□ 0.21
USF1-205ENST00000473969 FEZ1Q99689 392 aa16.38■□□□□ 0.21
USF1-205ENST00000473969 CFHR5Q9BXR6 569 aa16.38■□□□□ 0.21
USF1-205ENST00000473969 DOCK1Q14185 1865 aa16.37■□□□□ 0.21
USF1-205ENST00000473969 PDHXO00330 501 aa16.37■□□□□ 0.21
USF1-205ENST00000473969 HSPD1P10809 573 aaKnown RBP16.37■□□□□ 0.21
USF1-205ENST00000473969 BACE1P56817 501 aa16.37■□□□□ 0.21
USF1-205ENST00000473969 PPARAQ07869 468 aa16.37■□□□□ 0.21
USF1-205ENST00000473969 PABPC4Q13310 644 aaKnown RBP eCLIP16.37■□□□□ 0.21
USF1-205ENST00000473969 ALX1Q15699 326 aa16.37■□□□□ 0.21
USF1-205ENST00000473969 VPS53Q5VIR6 699 aa16.37■□□□□ 0.21
USF1-205ENST00000473969 ZNF589Q86UQ0 364 aaPredicted RBP16.37■□□□□ 0.21
USF1-205ENST00000473969 PROCA1Q8NCQ7 364 aaPredicted RBP16.37■□□□□ 0.21
USF1-205ENST00000473969 GPR25O00155 361 aa16.36■□□□□ 0.21
USF1-205ENST00000473969 USP14P54578 494 aa16.36■□□□□ 0.21
USF1-205ENST00000473969 HMGCS2P54868 508 aa16.36■□□□□ 0.21
USF1-205ENST00000473969 JAG1P78504 1218 aa16.36■□□□□ 0.21
USF1-205ENST00000473969 CRHR2Q13324 411 aa16.36■□□□□ 0.21
USF1-205ENST00000473969 MTMR2Q13614 643 aa16.36■□□□□ 0.21
USF1-205ENST00000473969 SEPT2Q15019 361 aa16.36■□□□□ 0.21
USF1-205ENST00000473969 PNMA3Q9UL41 463 aa16.36■□□□□ 0.21
USF1-205ENST00000473969 SIPA1L1O43166 1804 aa16.35■□□□□ 0.21
USF1-205ENST00000473969 FKTNO75072 461 aa16.35■□□□□ 0.21
USF1-205ENST00000473969 AKR1B1P15121 316 aa16.35■□□□□ 0.21
USF1-205ENST00000473969 SHROOM1Q2M3G4 852 aaPredicted RBP16.35■□□□□ 0.21
USF1-205ENST00000473969 SH3D19Q5HYK7 790 aa16.35■□□□□ 0.21
USF1-205ENST00000473969 USP17L2Q6R6M4 530 aa16.35■□□□□ 0.21
USF1-205ENST00000473969 PARK7Q99497 189 aaKnown RBP16.35■□□□□ 0.21
USF1-205ENST00000473969 SH2D4AQ9H788 454 aa16.35■□□□□ 0.21
USF1-205ENST00000473969 ARHGEF10LQ9HCE6 1279 aa16.35■□□□□ 0.21
USF1-205ENST00000473969 AGTPBP1Q9UPW5 1226 aa16.35■□□□□ 0.21
USF1-205ENST00000473969 DDX60LQ5H9U9 1706 aaKnown RBP16.34■□□□□ 0.21
USF1-205ENST00000473969 FGAP02671 866 aa16.34■□□□□ 0.21
USF1-205ENST00000473969 OSBPP22059 807 aa16.34■□□□□ 0.21
USF1-205ENST00000473969 CHMLP26374 656 aa16.34■□□□□ 0.21
USF1-205ENST00000473969 ATP2B2Q01814 1243 aa16.34■□□□□ 0.21
USF1-205ENST00000473969 ICA1Q05084 483 aa16.34■□□□□ 0.21
USF1-205ENST00000473969 NOM1Q5C9Z4 860 aaKnown RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms