RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 FAM53CQ9NYF3 392 aa5.8□□□□□ -1.48
SCN1A-205ENST00000473295 C8AP07357 584 aa5.79□□□□□ -1.48
SCN1A-205ENST00000473295 GRK4P32298 578 aa5.79□□□□□ -1.48
SCN1A-205ENST00000473295 AFMP43652 599 aa5.79□□□□□ -1.48
SCN1A-205ENST00000473295 XPCQ01831 940 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-205ENST00000473295 FZD5Q13467 585 aa5.79□□□□□ -1.48
SCN1A-205ENST00000473295 TSNAXIP1Q2TAA8 658 aa5.79□□□□□ -1.48
SCN1A-205ENST00000473295 SLC6A19Q695T7 634 aa5.79□□□□□ -1.48
SCN1A-205ENST00000473295 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-205ENST00000473295 THAP5Q7Z6K1 395 aa5.79□□□□□ -1.48
SCN1A-205ENST00000473295 NPAS4Q8IUM7 802 aa5.79□□□□□ -1.48
SCN1A-205ENST00000473295 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-205ENST00000473295 CARMIL2Q6F5E8 1435 aa5.79□□□□□ -1.48
SCN1A-205ENST00000473295 GFRA2O00451 464 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 PGRP06401 933 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 PDIA4P13667 645 aaKnown RBP5.78□□□□□ -1.48
SCN1A-205ENST00000473295 DAB2P98082 770 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 RPL6Q02878 288 aaKnown RBP5.78□□□□□ -1.48
SCN1A-205ENST00000473295 PSMD2Q13200 908 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 SEPT6Q14141 434 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 TAF1CQ15572 869 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-205ENST00000473295 NKG7Q16617 165 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 PRAMEF13Q5VWM6 474 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 ZSWIM9Q86XI8 627 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 AEBP1Q8IUX7 1158 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 MRPL41Q8IXM3 137 aaKnown RBP5.78□□□□□ -1.48
SCN1A-205ENST00000473295 HSPA12BQ96MM6 686 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 SEMA3GQ9NS98 782 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 PARP2Q9UGN5 583 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 ADAM30Q9UKF2 790 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 PCDHB5Q9Y5E4 795 aa5.78□□□□□ -1.48
SCN1A-205ENST00000473295 ETV3P41162 512 aa5.77□□□□□ -1.49
SCN1A-205ENST00000473295 PKN1Q16512 942 aa5.77□□□□□ -1.49
SCN1A-205ENST00000473295 KCNMB1Q16558 191 aa5.77□□□□□ -1.49
SCN1A-205ENST00000473295 CCDC84Q86UT8 332 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-205ENST00000473295 PIWIL2Q8TC59 973 aaKnown RBP5.77□□□□□ -1.49
SCN1A-205ENST00000473295 SLC38A3Q99624 504 aa5.77□□□□□ -1.49
SCN1A-205ENST00000473295 CAPN6Q9Y6Q1 641 aa5.77□□□□□ -1.49
SCN1A-205ENST00000473295 H3BS24 57 aa5.76□□□□□ -1.49
SCN1A-205ENST00000473295 ERCC3P19447 782 aa5.76□□□□□ -1.49
SCN1A-205ENST00000473295 MAP3K11Q16584 847 aa5.76□□□□□ -1.49
SCN1A-205ENST00000473295 CDKAL1Q5VV42 579 aa5.76□□□□□ -1.49
SCN1A-205ENST00000473295 TMEM87BQ96K49 555 aa5.76□□□□□ -1.49
SCN1A-205ENST00000473295 CARS2Q9HA77 564 aaKnown RBP5.76□□□□□ -1.49
SCN1A-205ENST00000473295 PRDM7Q9NQW5 492 aa5.76□□□□□ -1.49
SCN1A-205ENST00000473295 CTNND2Q9UQB3 1225 aa5.76□□□□□ -1.49
SCN1A-205ENST00000473295 PRR33A8MZF0 331 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 BPNT1O95861 308 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 TFE3P19532 575 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-205ENST00000473295 CDK8P49336 464 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 JAG1P78504 1218 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 MEI1Q5TIA1 1274 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 TMC4Q7Z404 712 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 MCATQ8IVS2 390 aaKnown RBP5.75□□□□□ -1.49
SCN1A-205ENST00000473295 KSR1Q8IVT5 923 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 BHLHE22Q8NFJ8 381 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-205ENST00000473295 XAGE3Q8WTP9 111 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 FAM84AQ96KN4 292 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 KRTAP9-9Q9BYP9 154 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 KRTAP9-4Q9BYQ2 154 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 TJP2Q9UDY2 1190 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 ST14Q9Y5Y6 855 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 USP31Q70CQ4 1352 aa5.75□□□□□ -1.49
SCN1A-205ENST00000473295 CBX7O95931 251 aa5.74□□□□□ -1.49
SCN1A-205ENST00000473295 GDNFP39905 211 aa5.74□□□□□ -1.49
SCN1A-205ENST00000473295 PWP1Q13610 501 aa5.74□□□□□ -1.49
SCN1A-205ENST00000473295 ZNF648Q5T619 568 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-205ENST00000473295 TMPRSS7Q7RTY8 843 aa5.74□□□□□ -1.49
SCN1A-205ENST00000473295 RIN3Q8TB24 985 aa5.74□□□□□ -1.49
SCN1A-205ENST00000473295 CRELD1Q96HD1 420 aa5.74□□□□□ -1.49
SCN1A-205ENST00000473295 TRIT1Q9H3H1 467 aaKnown RBP5.74□□□□□ -1.49
SCN1A-205ENST00000473295 ATP13A1Q9HD20 1204 aa5.74□□□□□ -1.49
SCN1A-205ENST00000473295 ARID1BQ8NFD5 2236 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-205ENST00000473295 LRRC10BA6NIK2 292 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 SORBS3O60504 671 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 GLI1P08151 1106 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 YARSP54577 528 aaKnown RBP5.73□□□□□ -1.49
SCN1A-205ENST00000473295 LMNB2Q03252 620 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 TNK2Q07912 1038 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 DNAJC14Q6Y2X3 702 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-205ENST00000473295 CDH24Q86UP0 819 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 RELL1Q8IUW5 271 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 PHC3Q8NDX5 983 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 JARID2Q92833 1246 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-205ENST00000473295 UBE2FQ969M7 185 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 KIRREL1Q96J84 757 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 ALPK1Q96QP1 1244 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 MRS2Q9HD23 443 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 RNF19AQ9NV58 838 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 ZSWIM5Q9P217 1185 aa5.73□□□□□ -1.49
SCN1A-205ENST00000473295 DBX1A6NMT0 343 aa5.72□□□□□ -1.49
SCN1A-205ENST00000473295 RAC2P15153 192 aa5.72□□□□□ -1.49
SCN1A-205ENST00000473295 TMEM67Q5HYA8 995 aa5.72□□□□□ -1.49
SCN1A-205ENST00000473295 CYB5D2Q8WUJ1 264 aa5.72□□□□□ -1.49
SCN1A-205ENST00000473295 ACSF2Q96CM8 615 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-205ENST00000473295 PPP1R16BQ96T49 567 aa5.72□□□□□ -1.49
SCN1A-205ENST00000473295 KCNH3Q9ULD8 1083 aa5.72□□□□□ -1.49
SCN1A-205ENST00000473295 CEP131Q9UPN4 1083 aa5.72□□□□□ -1.49
SCN1A-205ENST00000473295 TLR6Q9Y2C9 796 aa5.72□□□□□ -1.49
SCN1A-205ENST00000473295 CNTNAP4Q9C0A0 1308 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms