RNA–Protein interactions for RNA: ENST00000471887.1

HDAC9-221, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 446 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-221ENST00000471887 TJP2Q9UDY2 1190 aa8.55□□□□□ -1.04
HDAC9-221ENST00000471887 CYP26A1O43174 497 aa8.54□□□□□ -1.04
HDAC9-221ENST00000471887 COBLO75128 1261 aa8.54□□□□□ -1.04
HDAC9-221ENST00000471887 LEFTY1O75610 366 aa8.54□□□□□ -1.04
HDAC9-221ENST00000471887 HTR3BO95264 441 aa8.54□□□□□ -1.04
HDAC9-221ENST00000471887 CST3P01034 146 aaPredicted RBP8.54□□□□□ -1.04
HDAC9-221ENST00000471887 FOSL1P15407 271 aa8.54□□□□□ -1.04
HDAC9-221ENST00000471887 SEZ6Q53EL9 994 aa8.54□□□□□ -1.04
HDAC9-221ENST00000471887 TMEM201Q5SNT2 666 aa8.54□□□□□ -1.04
HDAC9-221ENST00000471887 INTS5Q6P9B9 1019 aaKnown RBP8.54□□□□□ -1.04
HDAC9-221ENST00000471887 ACSF2Q96CM8 615 aaPredicted RBP8.54□□□□□ -1.04
HDAC9-221ENST00000471887 REV1Q9UBZ9 1251 aa8.54□□□□□ -1.04
HDAC9-221ENST00000471887 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.54□□□□□ -1.04
HDAC9-221ENST00000471887 MCM4P33991 863 aa8.53□□□□□ -1.04
HDAC9-221ENST00000471887 MLECQ14165 292 aa8.53□□□□□ -1.04
HDAC9-221ENST00000471887 MIPEPQ99797 713 aa8.53□□□□□ -1.04
HDAC9-221ENST00000471887 PCDHB14Q9Y5E9 798 aa8.53□□□□□ -1.04
HDAC9-221ENST00000471887 ZNF165P49910 485 aa8.52□□□□□ -1.05
HDAC9-221ENST00000471887 YARSP54577 528 aaKnown RBP8.52□□□□□ -1.05
HDAC9-221ENST00000471887 SLITRK4Q8IW52 837 aa8.52□□□□□ -1.05
HDAC9-221ENST00000471887 REXO1Q8N1G1 1221 aaKnown RBP8.52□□□□□ -1.05
HDAC9-221ENST00000471887 FAM13CQ8NE31 585 aa8.52□□□□□ -1.05
HDAC9-221ENST00000471887 DPH2Q9BQC3 489 aaPredicted RBP8.52□□□□□ -1.05
HDAC9-221ENST00000471887 TGIF2Q9GZN2 237 aa8.52□□□□□ -1.05
HDAC9-221ENST00000471887 LRRC4CQ9HCJ2 640 aa8.52□□□□□ -1.05
HDAC9-221ENST00000471887 SLITRK5O94991 958 aa8.51□□□□□ -1.05
HDAC9-221ENST00000471887 CD97P48960 835 aa8.51□□□□□ -1.05
HDAC9-221ENST00000471887 GK5Q6ZS86 529 aa8.51□□□□□ -1.05
HDAC9-221ENST00000471887 XAGE3Q8WTP9 111 aa8.51□□□□□ -1.05
HDAC9-221ENST00000471887 GTF2IRD1Q9UHL9 959 aa8.51□□□□□ -1.05
HDAC9-221ENST00000471887 SCO2A0A1W2PP80 73 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 ATE1O95260 518 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 ERCC5P28715 1186 aaPredicted RBP8.5□□□□□ -1.05
HDAC9-221ENST00000471887 HOXA10P31260 410 aaPredicted RBP8.5□□□□□ -1.05
HDAC9-221ENST00000471887 SSTR4P31391 388 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 RAD51AP2Q09MP3 1159 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 PAK2Q13177 524 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 LRP8Q14114 963 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 LETMD1Q6P1Q0 360 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 ARHGAP27Q6ZUM4 889 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 SPATA32Q96LK8 384 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 CCSER2Q9H7U1 834 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 EHMT1Q9H9B1 1298 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 KLHL3Q9UH77 587 aa8.5□□□□□ -1.05
HDAC9-221ENST00000471887 EOMESO95936 686 aa8.49□□□□□ -1.05
HDAC9-221ENST00000471887 ZNF746Q6NUN9 644 aaPredicted RBP8.49□□□□□ -1.05
HDAC9-221ENST00000471887 SLFN12Q8IYM2 578 aa8.49□□□□□ -1.05
HDAC9-221ENST00000471887 MKNK2Q9HBH9 465 aa8.49□□□□□ -1.05
HDAC9-221ENST00000471887 PRDM5Q9NQX1 630 aaPredicted RBP8.49□□□□□ -1.05
HDAC9-221ENST00000471887 TPX2Q9ULW0 747 aaKnown RBP8.49□□□□□ -1.05
HDAC9-221ENST00000471887 UPK3BL1B0FP48 263 aa8.48□□□□□ -1.05
HDAC9-221ENST00000471887 UPK3BL2E5RIL1 263 aa8.48□□□□□ -1.05
HDAC9-221ENST00000471887 CLCQ05315 142 aa8.48□□□□□ -1.05
HDAC9-221ENST00000471887 CYB5D2Q8WUJ1 264 aa8.48□□□□□ -1.05
HDAC9-221ENST00000471887 GPRASP2Q96D09 838 aa8.48□□□□□ -1.05
HDAC9-221ENST00000471887 PCMTD2Q9NV79 361 aa8.48□□□□□ -1.05
HDAC9-221ENST00000471887 MAPK8IP1Q9UQF2 711 aa8.48□□□□□ -1.05
HDAC9-221ENST00000471887 CHURC1-FNTBB4DL54 471 aa8.47□□□□□ -1.05
HDAC9-221ENST00000471887 IGF2BP3O00425 579 aaKnown RBP eCLIP8.47□□□□□ -1.05
HDAC9-221ENST00000471887 MED26O95402 600 aa8.47□□□□□ -1.05
HDAC9-221ENST00000471887 MSMPQ1L6U9 139 aa8.47□□□□□ -1.05
HDAC9-221ENST00000471887 FAM214BQ7L5A3 538 aa8.47□□□□□ -1.05
HDAC9-221ENST00000471887 FAM181AQ8N9Y4 354 aa8.47□□□□□ -1.05
HDAC9-221ENST00000471887 RIN3Q8TB24 985 aa8.47□□□□□ -1.05
HDAC9-221ENST00000471887 HEXIM2Q96MH2 286 aaKnown RBP8.47□□□□□ -1.05
HDAC9-221ENST00000471887 ACBD3Q9H3P7 528 aa8.47□□□□□ -1.05
HDAC9-221ENST00000471887 GMIPQ9P107 970 aa8.47□□□□□ -1.05
HDAC9-221ENST00000471887 ZC3H7BQ9UGR2 993 aaKnown RBP8.47□□□□□ -1.05
HDAC9-221ENST00000471887 KIAA1324LA8MWY0 1029 aaPredicted RBP8.46□□□□□ -1.06
HDAC9-221ENST00000471887 DNAJA2O60884 412 aa8.46□□□□□ -1.06
HDAC9-221ENST00000471887 CYP7A1P22680 504 aa8.46□□□□□ -1.06
HDAC9-221ENST00000471887 GJA8P48165 433 aa8.46□□□□□ -1.06
HDAC9-221ENST00000471887 COL9A2Q14055 689 aaPredicted RBP8.46□□□□□ -1.06
HDAC9-221ENST00000471887 ARTNQ5T4W7 220 aa8.46□□□□□ -1.06
HDAC9-221ENST00000471887 PHACTR4Q8IZ21 702 aa8.46□□□□□ -1.06
HDAC9-221ENST00000471887 RASGRP4Q8TDF6 673 aa8.46□□□□□ -1.06
HDAC9-221ENST00000471887 COX4I2Q96KJ9 171 aa8.46□□□□□ -1.06
HDAC9-221ENST00000471887 INPP5FQ9Y2H2 1132 aa8.46□□□□□ -1.06
HDAC9-221ENST00000471887 SLC22A31A6NKX4 558 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 GNAT3A8MTJ3 354 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 HYAL3O43820 417 aaPredicted RBP8.45□□□□□ -1.06
HDAC9-221ENST00000471887 CEACAM5P06731 702 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 IMPDH2P12268 514 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 SPINK2P20155 84 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 ETV3P41162 512 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 OXCT1P55809 520 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 LRRFIP1Q32MZ4 808 aaKnown RBP8.45□□□□□ -1.06
HDAC9-221ENST00000471887 SFRP5Q5T4F7 317 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 CDH24Q86UP0 819 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 DTX1Q86Y01 620 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 NETO1Q8TDF5 533 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 CCDC74BQ96LY2 380 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 FERD3LQ96RJ6 166 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 ZFP64Q9NPA5 681 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 IGSF5Q9NSI5 407 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 BSDC1Q9NW68 430 aaPredicted RBP8.45□□□□□ -1.06
HDAC9-221ENST00000471887 CEP131Q9UPN4 1083 aa8.45□□□□□ -1.06
HDAC9-221ENST00000471887 OVOS1Q6IE37 1185 aa8.44□□□□□ -1.06
HDAC9-221ENST00000471887 ZNRF3Q9ULT6 936 aa8.44□□□□□ -1.06
HDAC9-221ENST00000471887 MEIS3P2A8K0S8 358 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms