RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 CCL15Q16663 113 aa18.29■□□□□ 0.52
SDC3-203ENST00000471567 CERKLQ49MI3 558 aaPredicted RBP18.29■□□□□ 0.52
SDC3-203ENST00000471567 IFNL3Q8IZI9 196 aa18.29■□□□□ 0.52
SDC3-203ENST00000471567 BRI3BPQ8WY22 251 aa18.29■□□□□ 0.52
SDC3-203ENST00000471567 DIAPH3Q9NSV4 1193 aa18.29■□□□□ 0.52
SDC3-203ENST00000471567 PPP4R2Q9NY27 417 aa18.29■□□□□ 0.52
SDC3-203ENST00000471567 TRPA1O75762 1119 aa18.28■□□□□ 0.52
SDC3-203ENST00000471567 HSPA8P11142 646 aaKnown RBP18.28■□□□□ 0.52
SDC3-203ENST00000471567 TDO2P48775 406 aa18.28■□□□□ 0.52
SDC3-203ENST00000471567 MFAP1P55081 439 aaKnown RBP18.28■□□□□ 0.52
SDC3-203ENST00000471567 CCDC129Q6ZRS4 1044 aa18.28■□□□□ 0.52
SDC3-203ENST00000471567 PTPN18Q99952 460 aa18.28■□□□□ 0.52
SDC3-203ENST00000471567 CFHR5Q9BXR6 569 aa18.28■□□□□ 0.52
SDC3-203ENST00000471567 AS3MTQ9HBK9 375 aa18.28■□□□□ 0.52
SDC3-203ENST00000471567 EPB41L4AQ9HCS5 686 aaPredicted RBP18.28■□□□□ 0.52
SDC3-203ENST00000471567 PCNTO95613 3336 aa18.28■□□□□ 0.52
SDC3-203ENST00000471567 BAZ2AQ9UIF9 1905 aaKnown RBP18.27■□□□□ 0.52
SDC3-203ENST00000471567 CYP2D7A0A087X1C5 515 aa18.27■□□□□ 0.52
SDC3-203ENST00000471567 IGF2BP3O00425 579 aaKnown RBP eCLIP18.27■□□□□ 0.52
SDC3-203ENST00000471567 EVX2Q03828 476 aa18.27■□□□□ 0.52
SDC3-203ENST00000471567 C16orf86Q6ZW13 317 aa18.27■□□□□ 0.52
SDC3-203ENST00000471567 WDR18Q9BV38 432 aa18.27■□□□□ 0.52
SDC3-203ENST00000471567 ZCCHC17Q9NP64 241 aaKnown RBP18.27■□□□□ 0.52
SDC3-203ENST00000471567 CABP5Q9NP86 173 aa18.27■□□□□ 0.52
SDC3-203ENST00000471567 ZBTB21Q9ULJ3 1066 aa18.27■□□□□ 0.52
SDC3-203ENST00000471567 GDF11O95390 407 aa18.26■□□□□ 0.51
SDC3-203ENST00000471567 CDK8P49336 464 aa18.26■□□□□ 0.51
SDC3-203ENST00000471567 JAG1P78504 1218 aa18.26■□□□□ 0.51
SDC3-203ENST00000471567 ALX1Q15699 326 aa18.26■□□□□ 0.51
SDC3-203ENST00000471567 ABCB5Q2M3G0 1257 aa18.26■□□□□ 0.51
SDC3-203ENST00000471567 FASTKD5Q7L8L6 764 aaKnown RBP18.26■□□□□ 0.51
SDC3-203ENST00000471567 ZNF280CQ8ND82 737 aa18.26■□□□□ 0.51
SDC3-203ENST00000471567 DYNLL2Q96FJ2 89 aa18.26■□□□□ 0.51
SDC3-203ENST00000471567 CCDC17Q96LX7 622 aa18.26■□□□□ 0.51
SDC3-203ENST00000471567 NAPBQ9H115 298 aa18.26■□□□□ 0.51
SDC3-203ENST00000471567 PRDM10Q9NQV6 1147 aa18.26■□□□□ 0.51
SDC3-203ENST00000471567 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.26■□□□□ 0.51
SDC3-203ENST00000471567 CCDC171Q6TFL3 1326 aa18.25■□□□□ 0.51
SDC3-203ENST00000471567 A0A0G2JLL6 359 aaPredicted RBP18.25■□□□□ 0.51
SDC3-203ENST00000471567 MINDY4BA8MYZ0 360 aa18.25■□□□□ 0.51
SDC3-203ENST00000471567 GH2P01242 217 aa18.25■□□□□ 0.51
SDC3-203ENST00000471567 LBX1P52954 281 aa18.25■□□□□ 0.51
SDC3-203ENST00000471567 SPP2Q13103 211 aa18.25■□□□□ 0.51
SDC3-203ENST00000471567 CWC27Q6UX04 472 aaKnown RBP18.25■□□□□ 0.51
SDC3-203ENST00000471567 PRRT2Q7Z6L0 340 aaPredicted RBP18.25■□□□□ 0.51
SDC3-203ENST00000471567 ROBO3Q96MS0 1386 aa18.25■□□□□ 0.51
SDC3-203ENST00000471567 ATAD5Q96QE3 1844 aa18.24■□□□□ 0.51
SDC3-203ENST00000471567 BTBD19C9JJ37 291 aa18.24■□□□□ 0.51
SDC3-203ENST00000471567 FOXP2O15409 715 aa18.24■□□□□ 0.51
SDC3-203ENST00000471567 MOGSQ13724 837 aa18.24■□□□□ 0.51
SDC3-203ENST00000471567 NOM1Q5C9Z4 860 aaKnown RBP18.24■□□□□ 0.51
SDC3-203ENST00000471567 VPS53Q5VIR6 699 aa18.24■□□□□ 0.51
SDC3-203ENST00000471567 ANKRD23Q86SG2 305 aa18.24■□□□□ 0.51
SDC3-203ENST00000471567 ZNF589Q86UQ0 364 aaPredicted RBP18.24■□□□□ 0.51
SDC3-203ENST00000471567 CCDC84Q86UT8 332 aaPredicted RBP18.24■□□□□ 0.51
SDC3-203ENST00000471567 SLC44A5Q8NCS7 719 aa18.24■□□□□ 0.51
SDC3-203ENST00000471567 ZNF287Q9HBT7 754 aa18.24■□□□□ 0.51
SDC3-203ENST00000471567 TSKSQ9UJT2 592 aa18.24■□□□□ 0.51
SDC3-203ENST00000471567 PHIPQ8WWQ0 1821 aa18.23■□□□□ 0.51
SDC3-203ENST00000471567 TRIM75PA6NK02 468 aa18.23■□□□□ 0.51
SDC3-203ENST00000471567 SMIM22K7EJ46 135 aa18.23■□□□□ 0.51
SDC3-203ENST00000471567 SLC3A2P08195 630 aaKnown RBP18.23■□□□□ 0.51
SDC3-203ENST00000471567 HSPD1P10809 573 aaKnown RBP18.23■□□□□ 0.51
SDC3-203ENST00000471567 SHROOM1Q2M3G4 852 aaPredicted RBP18.23■□□□□ 0.51
SDC3-203ENST00000471567 SH3D19Q5HYK7 790 aa18.23■□□□□ 0.51
SDC3-203ENST00000471567 FAM43AQ8N2R8 423 aa18.23■□□□□ 0.51
SDC3-203ENST00000471567 RUFY2Q8WXA3 655 aa18.23■□□□□ 0.51
SDC3-203ENST00000471567 ZMYM6O95789 1325 aa18.23■□□□□ 0.51
SDC3-203ENST00000471567 C19orf81C9J6K1 198 aa18.22■□□□□ 0.51
SDC3-203ENST00000471567 TBC1D8O95759 1140 aa18.22■□□□□ 0.51
SDC3-203ENST00000471567 CHMLP26374 656 aa18.22■□□□□ 0.51
SDC3-203ENST00000471567 BACE1P56817 501 aa18.22■□□□□ 0.51
SDC3-203ENST00000471567 PPARAQ07869 468 aa18.22■□□□□ 0.51
SDC3-203ENST00000471567 BMP2KLQ5H9B9 411 aa18.22■□□□□ 0.51
SDC3-203ENST00000471567 TMEM179Q6ZVK1 233 aa18.22■□□□□ 0.51
SDC3-203ENST00000471567 PROCA1Q8NCQ7 364 aaPredicted RBP18.22■□□□□ 0.51
SDC3-203ENST00000471567 RAD50Q92878 1312 aa18.22■□□□□ 0.51
SDC3-203ENST00000471567 USP17L10C9JJH3 530 aa18.21■□□□□ 0.51
SDC3-203ENST00000471567 MPHOSPH10O00566 681 aaKnown RBP18.21■□□□□ 0.51
SDC3-203ENST00000471567 FGAP02671 866 aa18.21■□□□□ 0.51
SDC3-203ENST00000471567 GUCY1A2P33402 732 aa18.21■□□□□ 0.51
SDC3-203ENST00000471567 RAB3GAP1Q15042 981 aa18.21■□□□□ 0.51
SDC3-203ENST00000471567 TAF1CQ15572 869 aaPredicted RBP18.21■□□□□ 0.51
SDC3-203ENST00000471567 GPAT2Q6NUI2 795 aa18.21■□□□□ 0.51
SDC3-203ENST00000471567 MKNK2Q9HBH9 465 aa18.21■□□□□ 0.51
SDC3-203ENST00000471567 ZFYVE28Q9HCC9 887 aa18.21■□□□□ 0.51
SDC3-203ENST00000471567 ANAPC4Q9UJX5 808 aa18.21■□□□□ 0.51
SDC3-203ENST00000471567 SLC45A1Q9Y2W3 748 aa18.21■□□□□ 0.51
SDC3-203ENST00000471567 PDHXO00330 501 aa18.2■□□□□ 0.5
SDC3-203ENST00000471567 AKR1B1P15121 316 aa18.2■□□□□ 0.5
SDC3-203ENST00000471567 PDE4BQ07343 736 aa18.2■□□□□ 0.5
SDC3-203ENST00000471567 CRHR2Q13324 411 aa18.2■□□□□ 0.5
SDC3-203ENST00000471567 SEPT2Q15019 361 aa18.2■□□□□ 0.5
SDC3-203ENST00000471567 GADL1Q6ZQY3 521 aa18.2■□□□□ 0.5
SDC3-203ENST00000471567 GPR25O00155 361 aa18.19■□□□□ 0.5
SDC3-203ENST00000471567 RASA1P20936 1047 aa18.19■□□□□ 0.5
SDC3-203ENST00000471567 HMGCS2P54868 508 aa18.19■□□□□ 0.5
SDC3-203ENST00000471567 MTMR2Q13614 643 aa18.19■□□□□ 0.5
SDC3-203ENST00000471567 SKAP1Q86WV1 359 aa18.19■□□□□ 0.5
SDC3-203ENST00000471567 DSCC1Q9BVC3 393 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms