RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 DAGLAQ9Y4D2 1042 aa6.66□□□□□ -1.34
VPS13A-210ENST00000471439 FAM170BA6NMN3 283 aa6.65□□□□□ -1.34
VPS13A-210ENST00000471439 XRCC5P13010 732 aaKnown RBP6.65□□□□□ -1.34
VPS13A-210ENST00000471439 GATA6Q92908 595 aa6.65□□□□□ -1.34
VPS13A-210ENST00000471439 C8orf37Q96NL8 207 aa6.65□□□□□ -1.34
VPS13A-210ENST00000471439 PCMTD2Q9NV79 361 aa6.65□□□□□ -1.34
VPS13A-210ENST00000471439 CRIM1Q9NZV1 1036 aa6.65□□□□□ -1.34
VPS13A-210ENST00000471439 CLTCQ00610 1675 aaKnown RBP6.65□□□□□ -1.35
VPS13A-210ENST00000471439 NME2P22392 152 aa6.64□□□□□ -1.35
VPS13A-210ENST00000471439 TAGLNQ01995 201 aaKnown RBP6.64□□□□□ -1.35
VPS13A-210ENST00000471439 PPP2R3AQ06190 1150 aa6.64□□□□□ -1.35
VPS13A-210ENST00000471439 ZNF252P-AS1Q0IIN9 211 aa6.64□□□□□ -1.35
VPS13A-210ENST00000471439 PAOXQ6QHF9 649 aa6.64□□□□□ -1.35
VPS13A-210ENST00000471439 GPBAR1Q8TDU6 330 aa6.64□□□□□ -1.35
VPS13A-210ENST00000471439 TBC1D32Q96NH3 1257 aa6.64□□□□□ -1.35
VPS13A-210ENST00000471439 FANCD2OSQ96PS1 177 aa6.64□□□□□ -1.35
VPS13A-210ENST00000471439 DUSP9Q99956 384 aaKnown RBP6.64□□□□□ -1.35
VPS13A-210ENST00000471439 CBX8Q9HC52 389 aa6.64□□□□□ -1.35
VPS13A-210ENST00000471439 SPG7Q9UQ90 795 aa6.64□□□□□ -1.35
VPS13A-210ENST00000471439 LRRC9Q6ZRR7 1453 aa6.64□□□□□ -1.35
VPS13A-210ENST00000471439 NEFMP07197 916 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 HCLS1P14317 486 aaPredicted RBP6.63□□□□□ -1.35
VPS13A-210ENST00000471439 HSPA6P17066 643 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 BMP6P22004 513 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 ARNTP27540 789 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 ABCC1P33527 1531 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 KIF4BQ2VIQ3 1234 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 HP1BP3Q5SSJ5 553 aaPredicted RBP6.63□□□□□ -1.35
VPS13A-210ENST00000471439 SLC51AQ86UW1 340 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 ABCA6Q8N139 1617 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 FAM161BQ96MY7 647 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 DISC1Q9NRI5 854 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 C1GALT1Q9NS00 363 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 PPP4R2Q9NY27 417 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 ITSN2Q9NZM3 1697 aa6.63□□□□□ -1.35
VPS13A-210ENST00000471439 KDM5DQ9BY66 1539 aa6.62□□□□□ -1.35
VPS13A-210ENST00000471439 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.62□□□□□ -1.35
VPS13A-210ENST00000471439 KIAA1324LA8MWY0 1029 aaPredicted RBP6.62□□□□□ -1.35
VPS13A-210ENST00000471439 EIF4EBP3O60516 100 aaPredicted RBP6.62□□□□□ -1.35
VPS13A-210ENST00000471439 SPINK2P20155 84 aa6.62□□□□□ -1.35
VPS13A-210ENST00000471439 ID3Q02535 119 aa6.62□□□□□ -1.35
VPS13A-210ENST00000471439 CDK5R2Q13319 367 aa6.62□□□□□ -1.35
VPS13A-210ENST00000471439 TTLL4Q14679 1199 aa6.62□□□□□ -1.35
VPS13A-210ENST00000471439 SEZ6L2Q6UXD5 910 aa6.62□□□□□ -1.35
VPS13A-210ENST00000471439 UBE3DQ7Z6J8 389 aa6.62□□□□□ -1.35
VPS13A-210ENST00000471439 ZAR1Q86SH2 424 aa6.62□□□□□ -1.35
VPS13A-210ENST00000471439 KRT82Q9NSB4 513 aa6.62□□□□□ -1.35
VPS13A-210ENST00000471439 ZC3H13Q5T200 1668 aaKnown RBP6.61□□□□□ -1.35
VPS13A-210ENST00000471439 NINLQ9Y2I6 1382 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 PCNTO95613 3336 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 COBLO75128 1261 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 PRPF40AO75400 957 aaKnown RBP6.61□□□□□ -1.35
VPS13A-210ENST00000471439 GNA15P30679 374 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 ZNF765Q7L2R6 523 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 FBXO33Q7Z6M2 555 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 NBPF11Q86T75 865 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 YIPF2Q9BWQ6 316 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 OSBPL1AQ9BXW6 950 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 KRTAP4-8Q9BYQ9 185 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 SRCIN1Q9C0H9 1055 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 ZFYVE1Q9HBF4 777 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 FAM8A1Q9UBU6 413 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 TTF2Q9UNY4 1162 aaKnown RBP6.61□□□□□ -1.35
VPS13A-210ENST00000471439 CSADQ9Y600 493 aa6.61□□□□□ -1.35
VPS13A-210ENST00000471439 PLCH2O75038 1416 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 TMEM94Q12767 1356 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 RBAK-RBAKDNI3L0D1 243 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 PTPN11Q06124 597 aaPredicted RBP6.6□□□□□ -1.35
VPS13A-210ENST00000471439 EAPPQ56P03 285 aaPredicted RBP6.6□□□□□ -1.35
VPS13A-210ENST00000471439 MEI1Q5TIA1 1274 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 PCNX4Q63HM2 1172 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 ACSBG1Q96GR2 724 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 CACNA2D2Q9NY47 1150 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 PIM2Q9P1W9 311 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 PPP1R1BQ9UD71 204 aaPredicted RBP6.6□□□□□ -1.35
VPS13A-210ENST00000471439 PPM1HQ9ULR3 514 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 U3KQE9 123 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 MAP3K1Q13233 1512 aa6.6□□□□□ -1.35
VPS13A-210ENST00000471439 DCDC2CA8MYV0 355 aa6.59□□□□□ -1.35
VPS13A-210ENST00000471439 EIF4BP23588 611 aaKnown RBP6.59□□□□□ -1.35
VPS13A-210ENST00000471439 NTF4P34130 210 aa6.59□□□□□ -1.35
VPS13A-210ENST00000471439 MAP7Q14244 749 aa6.59□□□□□ -1.35
VPS13A-210ENST00000471439 ZC3H12AQ5D1E8 599 aaKnown RBP6.59□□□□□ -1.35
VPS13A-210ENST00000471439 AFAP1Q8N556 730 aa6.59□□□□□ -1.35
VPS13A-210ENST00000471439 PIDD1Q9HB75 910 aa6.59□□□□□ -1.35
VPS13A-210ENST00000471439 ATG3Q9NT62 314 aa6.59□□□□□ -1.35
VPS13A-210ENST00000471439 PARP2Q9UGN5 583 aa6.59□□□□□ -1.35
VPS13A-210ENST00000471439 DIP2AQ14689 1571 aa6.59□□□□□ -1.35
VPS13A-210ENST00000471439 CARMIL1Q5VZK9 1371 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 BRWD3Q6RI45 1802 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 UNCXA6NJT0 531 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 GIPC1O14908 333 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 RNGTTO60942 597 aaKnown RBP6.58□□□□□ -1.36
VPS13A-210ENST00000471439 SLFN14P0C7P3 912 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 CDK8P49336 464 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 MSMPQ1L6U9 139 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 PPM1JQ5JR12 505 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 LLGL2Q6P1M3 1020 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-210ENST00000471439 NFXL1Q6ZNB6 911 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms