RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 EMILIN1Q9Y6C2 1016 aa5.88□□□□□ -1.47
COL3A1-205ENST00000470167 NPC1L1Q9UHC9 1359 aa5.88□□□□□ -1.47
COL3A1-205ENST00000470167 PTPRGP23470 1445 aa5.88□□□□□ -1.47
COL3A1-205ENST00000470167 KIAA1107Q9UPP5 1409 aa5.88□□□□□ -1.47
COL3A1-205ENST00000470167 A0A0G2JS52 829 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 A0A1W2PRQ8 180 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 DYTNA2CJ06 578 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 LRRC10BA6NIK2 292 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 A6NJY4 79 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 CTIFO43310 598 aaKnown RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 PLIN1O60240 522 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 OPA1O60313 960 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 CLASP2O75122 1294 aaKnown RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 ZBED4O75132 1171 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 RTN2O75298 545 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 RAPGEF3O95398 923 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 GNRH1P01148 92 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 EIF4BP23588 611 aaKnown RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 RPL13P26373 211 aaKnown RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 MNAT1P51948 309 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 HDAC4P56524 1084 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 CBLBQ13191 982 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 SLC4A8Q2Y0W8 1093 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 NBPF8Q3BBV2 869 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 GNPTABQ3T906 1256 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 RABL6Q3YEC7 729 aaPredicted RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 CPLX2Q6PUV4 134 aaKnown RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 NEK10Q6ZWH5 1172 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 ZNF598Q86UK7 904 aaKnown RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 ZNF280CQ8ND82 737 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 HELQQ8TDG4 1101 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 TEKT4Q8WW24 435 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 PIBF1Q8WXW3 757 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 TRIM52Q96A61 297 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 PAWRQ96IZ0 340 aaKnown RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 MPHOSPH6Q99547 160 aaKnown RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 ZNF304Q9HCX3 659 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 TCF7L2Q9NQB0 619 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 KMT5AQ9NQR1 393 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 INCENPQ9NQS7 918 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 HOMER3Q9NSC5 361 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 ZNHIT6Q9NWK9 470 aaKnown RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 ANKIB1Q9P2G1 1089 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 PGAP2Q9UHJ9 254 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 CTNNA3Q9UI47 895 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 ITGB1BP2Q9UKP3 347 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 COL4A3BPQ9Y5P4 624 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 DNMT3AQ9Y6K1 912 aaPredicted RBP5.87□□□□□ -1.47
COL3A1-205ENST00000470167 WASF2Q9Y6W5 498 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 SPATA31D1Q6ZQQ2 1576 aa5.87□□□□□ -1.47
COL3A1-205ENST00000470167 RIMBP3CA6NJZ7 1639 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 RIMBP3BA6NNM3 1639 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 RIMBP3Q9UFD9 1639 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 ATAD2Q6PL18 1390 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 IQCA1LA6NCM1 817 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 FOXO3O43524 673 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 STAM2O75886 525 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 RTN3O95197 1032 aaPredicted RBP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 IL2RAP01589 272 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 ADH1AP07327 375 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 TRIM21P19474 475 aaKnown RBP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 U2AF2P26368 475 aaKnown RBP eCLIP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 INPP5BP32019 993 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 USP8P40818 1118 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 ADCY1Q08828 1119 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 PABPC4Q13310 644 aaKnown RBP eCLIP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 MPP3Q13368 585 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 NAA30Q147X3 362 aaPredicted RBP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 VPS72Q15906 364 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 ESCO1Q5FWF5 840 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 SEPT14Q6ZU15 432 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 NPAS4Q8IUM7 802 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 SLC9A9Q8IVB4 645 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 GLYCTKQ8IVS8 523 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 RPAP2Q8IXW5 612 aaPredicted RBP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 LILRB2Q8N423 598 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 SMYD1Q8NB12 490 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 SLC35B4Q969S0 331 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 EXOC4Q96A65 974 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 ITPKCQ96DU7 683 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 PDLIM2Q96JY6 352 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 TMEM87BQ96K49 555 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 C8orf48Q96LL4 319 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 SLC4A9Q96Q91 983 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 SPAG5Q96R06 1193 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 PRKD2Q9BZL6 878 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 CCDC68Q9H2F9 335 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 MMADHCQ9H3L0 296 aaPredicted RBP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 NRDE2Q9H7Z3 1164 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 PANK3Q9H999 370 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 LGR6Q9HBX8 967 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 EPB41L4AQ9HCS5 686 aaPredicted RBP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 PCDH12Q9NPG4 1184 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 DDX56Q9NY93 547 aaKnown RBP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.86□□□□□ -1.47
COL3A1-205ENST00000470167 EGFL7Q9UHF1 273 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 GTF3C4Q9UKN8 822 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 USP3Q9Y6I4 520 aa5.86□□□□□ -1.47
COL3A1-205ENST00000470167 CCDC163A0A0D9SF12 145 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms