RNA–Protein interactions for RNA: ENST00000469670.1

TTC28-205, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-205ENST00000469670 FAM109BQ6ICB4 259 aaPredicted RBP22.52■■□□□ 1.2
TTC28-205ENST00000469670 CCAR1Q8IX12 1150 aaKnown RBP22.52■■□□□ 1.2
TTC28-205ENST00000469670 SH3RF3Q8TEJ3 882 aaPredicted RBP22.52■■□□□ 1.2
TTC28-205ENST00000469670 PORCNQ9H237 461 aa22.52■■□□□ 1.2
TTC28-205ENST00000469670 UNC80Q8N2C7 3258 aa22.51■■□□□ 1.19
TTC28-205ENST00000469670 POTEB2H3BUK9 544 aa22.51■■□□□ 1.19
TTC28-205ENST00000469670 ERVK-9P63128 1117 aa22.51■■□□□ 1.19
TTC28-205ENST00000469670 ERVK-24P63145 666 aa22.51■■□□□ 1.19
TTC28-205ENST00000469670 JAG1P78504 1218 aa22.51■■□□□ 1.19
TTC28-205ENST00000469670 MORN1Q5T089 497 aa22.51■■□□□ 1.19
TTC28-205ENST00000469670 GPR142Q7Z601 462 aa22.51■■□□□ 1.19
TTC28-205ENST00000469670 GUCD1Q96NT3 240 aa22.51■■□□□ 1.19
TTC28-205ENST00000469670 MEIS3Q99687 375 aa22.51■■□□□ 1.19
TTC28-205ENST00000469670 DHX36Q9H2U1 1008 aaKnown RBP22.51■■□□□ 1.19
TTC28-205ENST00000469670 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.51■■□□□ 1.19
TTC28-205ENST00000469670 ATAD5Q96QE3 1844 aa22.5■■□□□ 1.19
TTC28-205ENST00000469670 USP17L10C9JJH3 530 aa22.5■■□□□ 1.19
TTC28-205ENST00000469670 SLFN5Q08AF3 891 aa22.5■■□□□ 1.19
TTC28-205ENST00000469670 GORABQ5T7V8 394 aa22.5■■□□□ 1.19
TTC28-205ENST00000469670 PLEKHH3Q7Z736 793 aa22.5■■□□□ 1.19
TTC28-205ENST00000469670 GTF3C2Q8WUA4 911 aaPredicted RBP22.5■■□□□ 1.19
TTC28-205ENST00000469670 APBA2Q99767 749 aa22.5■■□□□ 1.19
TTC28-205ENST00000469670 NOL10Q9BSC4 688 aaKnown RBP22.5■■□□□ 1.19
TTC28-205ENST00000469670 PAGR1Q9BTK6 254 aa22.5■■□□□ 1.19
TTC28-205ENST00000469670 NOB1Q9ULX3 412 aaKnown RBP22.5■■□□□ 1.19
TTC28-205ENST00000469670 SRGAP3O43295 1099 aa22.49■■□□□ 1.19
TTC28-205ENST00000469670 DNAJC18Q9H819 358 aa22.49■■□□□ 1.19
TTC28-205ENST00000469670 LRP2BPQ9P2M1 347 aa22.49■■□□□ 1.19
TTC28-205ENST00000469670 ARID4AP29374 1257 aaPredicted RBP22.48■■□□□ 1.19
TTC28-205ENST00000469670 SHROOM1Q2M3G4 852 aaPredicted RBP22.48■■□□□ 1.19
TTC28-205ENST00000469670 FAM161BQ96MY7 647 aa22.48■■□□□ 1.19
TTC28-205ENST00000469670 LBHD1Q9BQE6 289 aaPredicted RBP22.48■■□□□ 1.19
TTC28-205ENST00000469670 API5Q9BZZ5 524 aaKnown RBP22.48■■□□□ 1.19
TTC28-205ENST00000469670 GINM1Q9NU53 330 aa22.48■■□□□ 1.19
TTC28-205ENST00000469670 GDF11O95390 407 aa22.47■■□□□ 1.19
TTC28-205ENST00000469670 POTEEQ6S8J3 1075 aa22.47■■□□□ 1.19
TTC28-205ENST00000469670 METTL16Q86W50 562 aaKnown RBP22.47■■□□□ 1.19
TTC28-205ENST00000469670 FOXP4Q8IVH2 680 aaPredicted RBP22.47■■□□□ 1.19
TTC28-205ENST00000469670 CRACR2BQ8N4Y2 399 aaPredicted RBP22.47■■□□□ 1.19
TTC28-205ENST00000469670 TRIM34Q9BYJ4 488 aa22.47■■□□□ 1.19
TTC28-205ENST00000469670 SENP6Q9GZR1 1112 aaPredicted RBP22.47■■□□□ 1.19
TTC28-205ENST00000469670 CWC22Q9HCG8 908 aaKnown RBP22.47■■□□□ 1.19
TTC28-205ENST00000469670 AATFQ9NY61 560 aaKnown RBP eCLIP22.47■■□□□ 1.19
TTC28-205ENST00000469670 BAG3O95817 575 aa22.46■■□□□ 1.19
TTC28-205ENST00000469670 MCAMP43121 646 aa22.46■■□□□ 1.19
TTC28-205ENST00000469670 MAP2K5Q13163 448 aa22.46■■□□□ 1.19
TTC28-205ENST00000469670 MAPKAPK5Q8IW41 473 aa22.46■■□□□ 1.19
TTC28-205ENST00000469670 TGFBRAP1Q8WUH2 860 aa22.46■■□□□ 1.19
TTC28-205ENST00000469670 ZBTB21Q9ULJ3 1066 aa22.46■■□□□ 1.19
TTC28-205ENST00000469670 PLCG2P16885 1265 aa22.45■■□□□ 1.18
TTC28-205ENST00000469670 MTX1Q13505 466 aa22.45■■□□□ 1.18
TTC28-205ENST00000469670 MFSD14CQ5VZR4 134 aa22.45■■□□□ 1.18
TTC28-205ENST00000469670 NAA16Q6N069 864 aaPredicted RBP22.45■■□□□ 1.18
TTC28-205ENST00000469670 USP17L2Q6R6M4 530 aa22.45■■□□□ 1.18
TTC28-205ENST00000469670 EDC3Q96F86 508 aaKnown RBP22.45■■□□□ 1.18
TTC28-205ENST00000469670 EMILIN3Q9NT22 766 aa22.45■■□□□ 1.18
TTC28-205ENST00000469670 FLT1P17948 1338 aa22.45■■□□□ 1.18
TTC28-205ENST00000469670 UQCRFS1P1P0C7P4 283 aa22.44■■□□□ 1.18
TTC28-205ENST00000469670 ZNF697Q5TEC3 545 aa22.44■■□□□ 1.18
TTC28-205ENST00000469670 RABGAP1Q9Y3P9 1069 aa22.44■■□□□ 1.18
TTC28-205ENST00000469670 SIPA1L1O43166 1804 aa22.43■■□□□ 1.18
TTC28-205ENST00000469670 GLRX3O76003 335 aaKnown RBP22.43■■□□□ 1.18
TTC28-205ENST00000469670 GNAI3P08754 354 aa22.43■■□□□ 1.18
TTC28-205ENST00000469670 ATN1P54259 1190 aaPredicted RBP22.43■■□□□ 1.18
TTC28-205ENST00000469670 PPP4CP60510 307 aa22.43■■□□□ 1.18
TTC28-205ENST00000469670 CDCA7LQ96GN5 454 aa22.43■■□□□ 1.18
TTC28-205ENST00000469670 FLRT1Q9NZU1 646 aa22.43■■□□□ 1.18
TTC28-205ENST00000469670 DDX20Q9UHI6 824 aaKnown RBP22.43■■□□□ 1.18
TTC28-205ENST00000469670 PALD1Q9ULE6 856 aa22.43■■□□□ 1.18
TTC28-205ENST00000469670 NDUFB9Q9Y6M9 179 aa22.43■■□□□ 1.18
TTC28-205ENST00000469670 CNMDO75829 334 aa22.42■■□□□ 1.18
TTC28-205ENST00000469670 CCNA1P78396 465 aa22.42■■□□□ 1.18
TTC28-205ENST00000469670 PRKAG2Q9UGJ0 569 aa22.42■■□□□ 1.18
TTC28-205ENST00000469670 MSCO60682 206 aa22.41■■□□□ 1.18
TTC28-205ENST00000469670 CNGA1P29973 690 aa22.41■■□□□ 1.18
TTC28-205ENST00000469670 WDR78Q5VTH9 848 aa22.41■■□□□ 1.18
TTC28-205ENST00000469670 LPAR1Q92633 364 aa22.41■■□□□ 1.18
TTC28-205ENST00000469670 SNRKQ9NRH2 765 aa22.41■■□□□ 1.18
TTC28-205ENST00000469670 SAP30BPQ9UHR5 308 aaKnown RBP22.41■■□□□ 1.18
TTC28-205ENST00000469670 SLC15A5A6NIM6 579 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 USP17L15C9J2P7 530 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 USP17L13C9JLJ4 530 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 USP17L11C9JVI0 530 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 USP17L18D6R9N7 530 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 USP17L22D6RA61 530 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 USP17L17D6RBQ6 530 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 USP17L19D6RCP7 530 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 USP17L20D6RJB6 530 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 HLA-DOAP06340 250 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 PTPREP23469 700 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 USP17L24Q0WX57 530 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 ADGRA1Q86SQ6 560 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 C12orf42Q96LP6 360 aa22.4■■□□□ 1.18
TTC28-205ENST00000469670 DNM1LO00429 736 aa22.39■■□□□ 1.17
TTC28-205ENST00000469670 GH2P01242 217 aa22.39■■□□□ 1.17
TTC28-205ENST00000469670 CT47B1P0C2W7 299 aaPredicted RBP22.39■■□□□ 1.17
TTC28-205ENST00000469670 RTP1P59025 263 aa22.39■■□□□ 1.17
TTC28-205ENST00000469670 ATP2B2Q01814 1243 aa22.39■■□□□ 1.17
TTC28-205ENST00000469670 G3BP1Q13283 466 aaKnown RBP eCLIP22.39■■□□□ 1.17
TTC28-205ENST00000469670 ZYXQ15942 572 aaKnown RBP22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms