RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 MTFR1Q15390 333 aa21.25■□□□□ 0.99
COL7A1-206ENST00000466591 FAM110CQ1W6H9 321 aa21.25■□□□□ 0.99
COL7A1-206ENST00000466591 SLC9C2Q5TAH2 1124 aa21.25■□□□□ 0.99
COL7A1-206ENST00000466591 ASCC2Q9H1I8 757 aaPredicted RBP21.25■□□□□ 0.99
COL7A1-206ENST00000466591 ZBTB21Q9ULJ3 1066 aa21.25■□□□□ 0.99
COL7A1-206ENST00000466591 GABRQQ9UN88 632 aa21.25■□□□□ 0.99
COL7A1-206ENST00000466591 PHIPQ8WWQ0 1821 aa21.25■□□□□ 0.99
COL7A1-206ENST00000466591 PTPRFP10586 1907 aa21.24■□□□□ 0.99
COL7A1-206ENST00000466591 C19orf81C9J6K1 198 aa21.24■□□□□ 0.99
COL7A1-206ENST00000466591 USP17L10C9JJH3 530 aa21.24■□□□□ 0.99
COL7A1-206ENST00000466591 RRP1BQ14684 758 aaKnown RBP21.24■□□□□ 0.99
COL7A1-206ENST00000466591 WDR18Q9BV38 432 aa21.24■□□□□ 0.99
COL7A1-206ENST00000466591 CRNKL1Q9BZJ0 848 aaKnown RBP21.24■□□□□ 0.99
COL7A1-206ENST00000466591 CABP5Q9NP86 173 aa21.24■□□□□ 0.99
COL7A1-206ENST00000466591 SERPINB13Q9UIV8 391 aa21.24■□□□□ 0.99
COL7A1-206ENST00000466591 SLC34A2O95436 690 aa21.23■□□□□ 0.99
COL7A1-206ENST00000466591 RAB3GAP1Q15042 981 aa21.23■□□□□ 0.99
COL7A1-206ENST00000466591 ZBTB40Q9NUA8 1239 aa21.23■□□□□ 0.99
COL7A1-206ENST00000466591 MGAMO43451 1857 aa21.22■□□□□ 0.99
COL7A1-206ENST00000466591 MYO5AQ9Y4I1 1855 aaKnown RBP21.22■□□□□ 0.99
COL7A1-206ENST00000466591 GH2P01242 217 aa21.22■□□□□ 0.99
COL7A1-206ENST00000466591 ELNP15502 786 aa21.22■□□□□ 0.99
COL7A1-206ENST00000466591 SH3D19Q5HYK7 790 aa21.22■□□□□ 0.99
COL7A1-206ENST00000466591 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.22■□□□□ 0.99
COL7A1-206ENST00000466591 KIAA0100Q14667 2235 aaKnown RBP21.22■□□□□ 0.99
COL7A1-206ENST00000466591 INHAP05111 366 aa21.21■□□□□ 0.99
COL7A1-206ENST00000466591 ZYXQ15942 572 aaKnown RBP21.21■□□□□ 0.99
COL7A1-206ENST00000466591 CERKLQ49MI3 558 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-206ENST00000466591 AMOTL1Q8IY63 956 aa21.21■□□□□ 0.99
COL7A1-206ENST00000466591 DPF3Q92784 378 aa21.21■□□□□ 0.99
COL7A1-206ENST00000466591 DNAJC18Q9H819 358 aa21.21■□□□□ 0.99
COL7A1-206ENST00000466591 LOC285556D6RIA3 1793 aa21.2■□□□□ 0.99
COL7A1-206ENST00000466591 HTTP42858 3142 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 FOCADQ5VW36 1801 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 MPHOSPH10O00566 681 aaKnown RBP21.2■□□□□ 0.98
COL7A1-206ENST00000466591 GJB1P08034 283 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 PDE6AP16499 860 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 ABCB5Q2M3G0 1257 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 USP17L2Q6R6M4 530 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 PXYLP1Q8TE99 480 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 DDRGK1Q96HY6 314 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 MCM9Q9NXL9 1143 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 ZNF532Q9HCE3 1301 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 CDK5RAP2Q96SN8 1893 aa21.2■□□□□ 0.98
COL7A1-206ENST00000466591 IRF5Q13568 498 aa21.19■□□□□ 0.98
COL7A1-206ENST00000466591 PDE3AQ14432 1141 aa21.19■□□□□ 0.98
COL7A1-206ENST00000466591 METTL16Q86W50 562 aaKnown RBP21.19■□□□□ 0.98
COL7A1-206ENST00000466591 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.19■□□□□ 0.98
COL7A1-206ENST00000466591 PAGR1Q9BTK6 254 aa21.19■□□□□ 0.98
COL7A1-206ENST00000466591 HTATIP2Q9BUP3 242 aa21.19■□□□□ 0.98
COL7A1-206ENST00000466591 EHD4Q9H223 541 aa21.19■□□□□ 0.98
COL7A1-206ENST00000466591 BOLA2Q9H3K6 86 aa21.19■□□□□ 0.98
COL7A1-206ENST00000466591 PAG1Q9NWQ8 432 aa21.19■□□□□ 0.98
COL7A1-206ENST00000466591 MYH1P12882 1939 aa21.19■□□□□ 0.98
COL7A1-206ENST00000466591 TFRCP02786 760 aaKnown RBP21.18■□□□□ 0.98
COL7A1-206ENST00000466591 GJA8P48165 433 aa21.18■□□□□ 0.98
COL7A1-206ENST00000466591 USP14P54578 494 aa21.18■□□□□ 0.98
COL7A1-206ENST00000466591 GPRC5AQ8NFJ5 357 aa21.18■□□□□ 0.98
COL7A1-206ENST00000466591 GTF3C2Q8WUA4 911 aaPredicted RBP21.18■□□□□ 0.98
COL7A1-206ENST00000466591 LRRCC1Q9C099 1032 aa21.18■□□□□ 0.98
COL7A1-206ENST00000466591 UNC93B1Q9H1C4 597 aa21.18■□□□□ 0.98
COL7A1-206ENST00000466591 SIPA1L1O43166 1804 aa21.18■□□□□ 0.98
COL7A1-206ENST00000466591 HERVK_113P62684 666 aa21.17■□□□□ 0.98
COL7A1-206ENST00000466591 SHROOM1Q2M3G4 852 aaPredicted RBP21.17■□□□□ 0.98
COL7A1-206ENST00000466591 U2AF1L4Q8WU68 220 aaKnown RBP21.17■□□□□ 0.98
COL7A1-206ENST00000466591 P2RX7Q99572 595 aaKnown RBP21.17■□□□□ 0.98
COL7A1-206ENST00000466591 CENPFP49454 3210 aa21.16■□□□□ 0.98
COL7A1-206ENST00000466591 FARP2O94887 1054 aaPredicted RBP21.16■□□□□ 0.98
COL7A1-206ENST00000466591 HOXA7P31268 230 aaPredicted RBP21.16■□□□□ 0.98
COL7A1-206ENST00000466591 JAG1P78504 1218 aa21.16■□□□□ 0.98
COL7A1-206ENST00000466591 SIRT2Q8IXJ6 389 aa21.16■□□□□ 0.98
COL7A1-206ENST00000466591 GPATCH3Q96I76 525 aa21.16■□□□□ 0.98
COL7A1-206ENST00000466591 DEFB118Q96PH6 123 aa21.16■□□□□ 0.98
COL7A1-206ENST00000466591 RIOK1Q9BRS2 568 aaKnown RBP21.16■□□□□ 0.98
COL7A1-206ENST00000466591 WDR78Q5VTH9 848 aa21.15■□□□□ 0.98
COL7A1-206ENST00000466591 ZSCAN25Q6NSZ9 544 aa21.15■□□□□ 0.98
COL7A1-206ENST00000466591 TATDN1Q6P1N9 297 aa21.15■□□□□ 0.98
COL7A1-206ENST00000466591 SDR42E1Q8WUS8 393 aa21.15■□□□□ 0.98
COL7A1-206ENST00000466591 NAV1Q8NEY1 1877 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 USP17L15C9J2P7 530 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 USP17L13C9JLJ4 530 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 USP17L11C9JVI0 530 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 USP17L18D6R9N7 530 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 USP17L22D6RA61 530 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 USP17L17D6RBQ6 530 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 USP17L19D6RCP7 530 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 USP17L20D6RJB6 530 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 SGPL1O95470 568 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 HMGCRP04035 888 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 ATP5JP18859 108 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 MAPK4P31152 587 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 PLCD1P51178 756 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 USP17L24Q0WX57 530 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 LCORLQ8N3X6 602 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 SOCS4Q8WXH5 440 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 SHISA4Q96DD7 197 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 EDC3Q96F86 508 aaKnown RBP21.14■□□□□ 0.97
COL7A1-206ENST00000466591 NUDT12Q9BQG2 462 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 ARMT1Q9H993 441 aa21.14■□□□□ 0.97
COL7A1-206ENST00000466591 MORF4L1Q9UBU8 362 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms