RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-211ENST00000466538 SRPK1Q96SB4 655 aaKnown RBP6.56□□□□□ -1.36
CDC42BPA-211ENST00000466538 TNKS2Q9H2K2 1166 aa6.56□□□□□ -1.36
CDC42BPA-211ENST00000466538 TJP2Q9UDY2 1190 aa6.56□□□□□ -1.36
CDC42BPA-211ENST00000466538 USP21Q9UK80 565 aa6.56□□□□□ -1.36
CDC42BPA-211ENST00000466538 PCOLCE2Q9UKZ9 415 aa6.56□□□□□ -1.36
CDC42BPA-211ENST00000466538 TMA7Q9Y2S6 64 aaKnown RBP6.56□□□□□ -1.36
CDC42BPA-211ENST00000466538 MSRB2Q9Y3D2 182 aa6.56□□□□□ -1.36
CDC42BPA-211ENST00000466538 SART1O43290 800 aaKnown RBP6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 SMARCA5O60264 1052 aaPredicted RBP6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 RAG1P15918 1043 aa6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 BMS1Q14692 1282 aaKnown RBP6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 DDR2Q16832 855 aa6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 ARSHQ5FYA8 562 aa6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 SHISA2Q6UWI4 295 aa6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 RUFY4Q6ZNE9 571 aa6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 SMYD4Q8IYR2 804 aaPredicted RBP6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 FAM13CQ8NE31 585 aa6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 PIF1Q9H611 641 aa6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 PHAXQ9H814 394 aaKnown RBP6.55□□□□□ -1.36
CDC42BPA-211ENST00000466538 RGS13O14921 159 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 DNAJA2O60884 412 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 RNGTTO60942 597 aaKnown RBP6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 CST3P01034 146 aaPredicted RBP6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 SLBPQ14493 270 aaKnown RBP eCLIP6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 UNC5AQ6ZN44 842 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 CELF2-AS1Q8N7Q2 184 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 WFDC12Q8WWY7 111 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 ISL2Q96A47 359 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 DHRS1Q96LJ7 313 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 CCDC74BQ96LY2 380 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 DEPDC7Q96QD5 511 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 YIPF2Q9BWQ6 316 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 SSU72Q9NP77 194 aaKnown RBP6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 FAM105AQ9NUU6 356 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 KLHL3Q9UH77 587 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 ACTL7BQ9Y614 415 aa6.54□□□□□ -1.36
CDC42BPA-211ENST00000466538 UPK3BL1B0FP48 263 aa6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 UPK3BL2E5RIL1 263 aa6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 NEFMP07197 916 aa6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 ACRP10323 421 aa6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 HCLS1P14317 486 aaPredicted RBP6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 USP11P51784 963 aa6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 NCAPHQ15003 741 aa6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 UVSSAQ2YD98 709 aa6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 LARP1BQ659C4 914 aaKnown RBP6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 AGGF1Q8N302 714 aaeCLIP6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 MFSD2AQ8NA29 543 aa6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 FAM46AQ96IP4 442 aaKnown RBP6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 SLC9A7Q96T83 725 aa6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 ACSS3Q9H6R3 686 aa6.53□□□□□ -1.36
CDC42BPA-211ENST00000466538 PDPK1O15530 556 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 GAS2O43903 313 aaKnown RBP6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 DDAH1O94760 285 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 LRIG2O94898 1065 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 ALX3O95076 343 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 GLB1P16278 677 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 COL8A1P27658 744 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 RASGRF1Q13972 1273 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 ADGRE1Q14246 886 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 RASA3Q14644 834 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 NKG7Q16617 165 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 BBS9Q3SYG4 887 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 FAM178BQ8IXR5 827 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 PHACTR4Q8IZ21 702 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 FAM177A1Q8N128 213 aaPredicted RBP6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 EZH1Q92800 747 aaPredicted RBP6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 ZNF669Q96BR6 464 aaPredicted RBP6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 FOXQ1Q9C009 403 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 FBRSQ9HAH7 460 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 ST7Q9NRC1 585 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 SNTG2Q9NY99 539 aa6.52□□□□□ -1.37
CDC42BPA-211ENST00000466538 FAM181BA6NEQ2 426 aa6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 NOS3P29474 1203 aa6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 GBP1P32455 592 aa6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 PREPP48147 710 aa6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 IREB2P48200 963 aaKnown RBP6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 MAP7Q14244 749 aa6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 DZIP1LQ8IYY4 767 aaKnown RBP6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 ST13P5Q8NFI4 369 aaPredicted RBP6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 CYB5D2Q8WUJ1 264 aa6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 UBL7Q96S82 380 aaPredicted RBP6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 MAPK8IP1Q9UQF2 711 aa6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 TBX22Q9Y458 520 aa6.51□□□□□ -1.37
CDC42BPA-211ENST00000466538 LTBP3Q9NS15 1303 aa6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 GJB6O95452 261 aa6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 SLC7A5Q01650 507 aa6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 IFRD2Q12894 506 aaPredicted RBP6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 MBTPS1Q14703 1052 aa6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 ZYXQ15942 572 aaKnown RBP6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 VHLLQ6RSH7 139 aa6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 MICAL1Q8TDZ2 1067 aa6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 KIF2CQ99661 725 aa6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 ZNF214Q9UL59 606 aaPredicted RBP6.5□□□□□ -1.37
CDC42BPA-211ENST00000466538 FAM221BA6H8Z2 402 aa6.49□□□□□ -1.37
CDC42BPA-211ENST00000466538 PMS1P54277 932 aaKnown RBP6.49□□□□□ -1.37
CDC42BPA-211ENST00000466538 PRAMEF13Q5VWM6 474 aa6.49□□□□□ -1.37
CDC42BPA-211ENST00000466538 SDE2Q6IQ49 451 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms