RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 GTF3C2Q8WUA4 911 aaPredicted RBP18.75■□□□□ 0.59
SKA3-204ENST00000462482 EAF2Q96CJ1 260 aaPredicted RBP18.75■□□□□ 0.59
SKA3-204ENST00000462482 MORF4L1Q9UBU8 362 aa18.75■□□□□ 0.59
SKA3-204ENST00000462482 ZBTB21Q9ULJ3 1066 aa18.75■□□□□ 0.59
SKA3-204ENST00000462482 EVI5O60447 810 aa18.74■□□□□ 0.59
SKA3-204ENST00000462482 HOXA7P31268 230 aaPredicted RBP18.74■□□□□ 0.59
SKA3-204ENST00000462482 DYNLL1P63167 89 aaKnown RBP18.74■□□□□ 0.59
SKA3-204ENST00000462482 PDE3AQ14432 1141 aa18.74■□□□□ 0.59
SKA3-204ENST00000462482 MAGEB6Q8N7X4 407 aa18.74■□□□□ 0.59
SKA3-204ENST00000462482 MIGA1Q8NAN2 632 aa18.74■□□□□ 0.59
SKA3-204ENST00000462482 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.74■□□□□ 0.59
SKA3-204ENST00000462482 CWC22Q9HCG8 908 aaKnown RBP18.74■□□□□ 0.59
SKA3-204ENST00000462482 PAK6Q9NQU5 681 aaPredicted RBP18.74■□□□□ 0.59
SKA3-204ENST00000462482 TLR7Q9NYK1 1049 aaKnown RBP18.74■□□□□ 0.59
SKA3-204ENST00000462482 RLBP1P12271 317 aa18.73■□□□□ 0.59
SKA3-204ENST00000462482 HERVK_113P62684 666 aa18.73■□□□□ 0.59
SKA3-204ENST00000462482 CEP85Q6P2H3 762 aa18.73■□□□□ 0.59
SKA3-204ENST00000462482 USP17L2Q6R6M4 530 aa18.73■□□□□ 0.59
SKA3-204ENST00000462482 TTC6Q86TZ1 520 aa18.73■□□□□ 0.59
SKA3-204ENST00000462482 AACSQ86V21 672 aa18.73■□□□□ 0.59
SKA3-204ENST00000462482 P2RX7Q99572 595 aaKnown RBP18.73■□□□□ 0.59
SKA3-204ENST00000462482 FEZ1Q99689 392 aa18.73■□□□□ 0.59
SKA3-204ENST00000462482 DNAJC18Q9H819 358 aa18.73■□□□□ 0.59
SKA3-204ENST00000462482 HMX1Q9NP08 348 aaPredicted RBP18.73■□□□□ 0.59
SKA3-204ENST00000462482 MAPK4P31152 587 aa18.72■□□□□ 0.59
SKA3-204ENST00000462482 NECAB2Q7Z6G3 386 aa18.72■□□□□ 0.59
SKA3-204ENST00000462482 TRMT44Q8IYL2 757 aaKnown RBP18.72■□□□□ 0.59
SKA3-204ENST00000462482 SOCS4Q8WXH5 440 aa18.72■□□□□ 0.59
SKA3-204ENST00000462482 NUDT12Q9BQG2 462 aa18.72■□□□□ 0.59
SKA3-204ENST00000462482 EXOC6BQ9Y2D4 811 aa18.72■□□□□ 0.59
SKA3-204ENST00000462482 RPTORQ8N122 1335 aa18.72■□□□□ 0.59
SKA3-204ENST00000462482 GH2P01242 217 aa18.71■□□□□ 0.59
SKA3-204ENST00000462482 CYP2B6P20813 491 aa18.71■□□□□ 0.59
SKA3-204ENST00000462482 TTF1Q15361 905 aaPredicted RBP18.71■□□□□ 0.59
SKA3-204ENST00000462482 ANKLE1Q8NAG6 615 aa18.71■□□□□ 0.59
SKA3-204ENST00000462482 CABP5Q9NP86 173 aa18.71■□□□□ 0.59
SKA3-204ENST00000462482 SERPINB13Q9UIV8 391 aa18.71■□□□□ 0.59
SKA3-204ENST00000462482 GJD2Q9UKL4 321 aa18.71■□□□□ 0.59
SKA3-204ENST00000462482 CENPFP49454 3210 aa18.71■□□□□ 0.59
SKA3-204ENST00000462482 USP14P54578 494 aa18.7■□□□□ 0.58
SKA3-204ENST00000462482 JAG1P78504 1218 aa18.7■□□□□ 0.58
SKA3-204ENST00000462482 PAWRQ96IZ0 340 aaKnown RBP18.7■□□□□ 0.58
SKA3-204ENST00000462482 PAGR1Q9BTK6 254 aa18.7■□□□□ 0.58
SKA3-204ENST00000462482 CRISPLD2Q9H0B8 497 aa18.7■□□□□ 0.58
SKA3-204ENST00000462482 EHD4Q9H223 541 aa18.7■□□□□ 0.58
SKA3-204ENST00000462482 HMMRO75330 724 aa18.69■□□□□ 0.58
SKA3-204ENST00000462482 POLR3DP05423 398 aaPredicted RBP18.69■□□□□ 0.58
SKA3-204ENST00000462482 RAB3GAP1Q15042 981 aa18.69■□□□□ 0.58
SKA3-204ENST00000462482 CERKLQ49MI3 558 aaPredicted RBP18.69■□□□□ 0.58
SKA3-204ENST00000462482 MIER1Q8N108 512 aa18.69■□□□□ 0.58
SKA3-204ENST00000462482 CLASRPQ8N2M8 674 aaKnown RBP18.69■□□□□ 0.58
SKA3-204ENST00000462482 RBM27Q9P2N5 1060 aaKnown RBP18.69■□□□□ 0.58
SKA3-204ENST00000462482 MAGEB6P1A0A0J9YX57 407 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 USP17L15C9J2P7 530 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 USP17L13C9JLJ4 530 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 USP17L11C9JVI0 530 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 USP17L18D6R9N7 530 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 USP17L22D6RA61 530 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 USP17L17D6RBQ6 530 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 USP17L19D6RCP7 530 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 USP17L20D6RJB6 530 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 GLRX3O76003 335 aaKnown RBP18.68■□□□□ 0.58
SKA3-204ENST00000462482 XRCC5P13010 732 aaKnown RBP18.68■□□□□ 0.58
SKA3-204ENST00000462482 ZKSCAN1P17029 563 aaPredicted RBP18.68■□□□□ 0.58
SKA3-204ENST00000462482 ERVK-9P63128 1117 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 ERVK-24P63145 666 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 CCNA1P78396 465 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 USP17L24Q0WX57 530 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 ZYXQ15942 572 aaKnown RBP18.68■□□□□ 0.58
SKA3-204ENST00000462482 ABCB5Q2M3G0 1257 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 TATDN1Q6P1N9 297 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 PANK1Q8TE04 598 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 CRNKL1Q9BZJ0 848 aaKnown RBP18.68■□□□□ 0.58
SKA3-204ENST00000462482 ANTXR1Q9H6X2 564 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 EMILIN3Q9NT22 766 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 NDUFB9Q9Y6M9 179 aa18.68■□□□□ 0.58
SKA3-204ENST00000462482 MKI67P46013 3256 aaKnown RBP18.67■□□□□ 0.58
SKA3-204ENST00000462482 IFIT2P09913 472 aaKnown RBP18.67■□□□□ 0.58
SKA3-204ENST00000462482 RGS2P41220 211 aa18.67■□□□□ 0.58
SKA3-204ENST00000462482 SHROOM1Q2M3G4 852 aaPredicted RBP18.67■□□□□ 0.58
SKA3-204ENST00000462482 DIEXFQ68CQ4 756 aaKnown RBP18.67■□□□□ 0.58
SKA3-204ENST00000462482 PLEKHH3Q7Z736 793 aa18.67■□□□□ 0.58
SKA3-204ENST00000462482 RHPN1Q8TCX5 695 aa18.67■□□□□ 0.58
SKA3-204ENST00000462482 NBPF3Q9H094 633 aa18.67■□□□□ 0.58
SKA3-204ENST00000462482 CHMP4BQ9H444 224 aaKnown RBP18.67■□□□□ 0.58
SKA3-204ENST00000462482 TXNRD2Q9NNW7 524 aa18.67■□□□□ 0.58
SKA3-204ENST00000462482 IL1RAPL2Q9NP60 686 aa18.67■□□□□ 0.58
SKA3-204ENST00000462482 RBPJLQ9UBG7 517 aa18.67■□□□□ 0.58
SKA3-204ENST00000462482 ZBED9Q6R2W3 1325 aa18.67■□□□□ 0.58
SKA3-204ENST00000462482 MAST2Q6P0Q8 1798 aa18.66■□□□□ 0.58
SKA3-204ENST00000462482 PRKAR2AP13861 404 aaKnown RBP18.66■□□□□ 0.58
SKA3-204ENST00000462482 SLC9C2Q5TAH2 1124 aa18.66■□□□□ 0.58
SKA3-204ENST00000462482 RPAP2Q8IXW5 612 aaPredicted RBP18.66■□□□□ 0.58
SKA3-204ENST00000462482 TRIB2Q92519 343 aa18.66■□□□□ 0.58
SKA3-204ENST00000462482 KIF1BPQ96EK5 621 aa18.66■□□□□ 0.58
SKA3-204ENST00000462482 C12orf42Q96LP6 360 aa18.66■□□□□ 0.58
SKA3-204ENST00000462482 BCL11AQ9H165 835 aa18.66■□□□□ 0.58
SKA3-204ENST00000462482 RABGAP1Q9Y3P9 1069 aa18.66■□□□□ 0.58
SKA3-204ENST00000462482 PHIPQ8WWQ0 1821 aa18.65■□□□□ 0.58
SKA3-204ENST00000462482 APBB1O00213 710 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms