RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 HTATIP2Q9BUP3 242 aa19.68■□□□□ 0.74
COL7A1-204ENST00000462475 TRIM34Q9BYJ4 488 aa19.68■□□□□ 0.74
COL7A1-204ENST00000462475 PAK6Q9NQU5 681 aaPredicted RBP19.68■□□□□ 0.74
COL7A1-204ENST00000462475 ZBTB21Q9ULJ3 1066 aa19.68■□□□□ 0.74
COL7A1-204ENST00000462475 CDK5RAP2Q96SN8 1893 aa19.68■□□□□ 0.74
COL7A1-204ENST00000462475 MYO5AQ9Y4I1 1855 aaKnown RBP19.68■□□□□ 0.74
COL7A1-204ENST00000462475 TRIOBPQ9H2D6 2365 aa19.68■□□□□ 0.74
COL7A1-204ENST00000462475 FOCADQ5VW36 1801 aa19.67■□□□□ 0.74
COL7A1-204ENST00000462475 IGSF3O75054 1194 aa19.67■□□□□ 0.74
COL7A1-204ENST00000462475 IRX3P78415 501 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-204ENST00000462475 MIGA1Q8NAN2 632 aa19.67■□□□□ 0.74
COL7A1-204ENST00000462475 EXOC6BQ9Y2D4 811 aa19.67■□□□□ 0.74
COL7A1-204ENST00000462475 SZT2Q5T011 3432 aa19.67■□□□□ 0.74
COL7A1-204ENST00000462475 PEX10O60683 326 aa19.66■□□□□ 0.74
COL7A1-204ENST00000462475 MAGEB6Q8N7X4 407 aa19.66■□□□□ 0.74
COL7A1-204ENST00000462475 PANK1Q8TE04 598 aa19.66■□□□□ 0.74
COL7A1-204ENST00000462475 ANTXR1Q9H6X2 564 aa19.66■□□□□ 0.74
COL7A1-204ENST00000462475 TMOD4Q9NZQ9 345 aa19.66■□□□□ 0.74
COL7A1-204ENST00000462475 MORF4L1Q9UBU8 362 aa19.66■□□□□ 0.74
COL7A1-204ENST00000462475 GJD2Q9UKL4 321 aa19.66■□□□□ 0.74
COL7A1-204ENST00000462475 TFRCP02786 760 aaKnown RBP19.65■□□□□ 0.74
COL7A1-204ENST00000462475 HLA-DOAP06340 250 aa19.65■□□□□ 0.74
COL7A1-204ENST00000462475 HOXA7P31268 230 aaPredicted RBP19.65■□□□□ 0.74
COL7A1-204ENST00000462475 P2RX7Q99572 595 aaKnown RBP19.65■□□□□ 0.74
COL7A1-204ENST00000462475 TXNRD2Q9NNW7 524 aa19.65■□□□□ 0.74
COL7A1-204ENST00000462475 DOCK3Q8IZD9 2030 aa19.64■□□□□ 0.74
COL7A1-204ENST00000462475 USP17L10C9JJH3 530 aa19.64■□□□□ 0.73
COL7A1-204ENST00000462475 HMGCRP04035 888 aa19.64■□□□□ 0.73
COL7A1-204ENST00000462475 HERVK_113P62684 666 aa19.64■□□□□ 0.73
COL7A1-204ENST00000462475 TRIM32Q13049 653 aa19.64■□□□□ 0.73
COL7A1-204ENST00000462475 AACSQ86V21 672 aa19.64■□□□□ 0.73
COL7A1-204ENST00000462475 CRISPLD2Q9H0B8 497 aa19.64■□□□□ 0.73
COL7A1-204ENST00000462475 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.64■□□□□ 0.73
COL7A1-204ENST00000462475 GINM1Q9NU53 330 aa19.64■□□□□ 0.73
COL7A1-204ENST00000462475 RBM27Q9P2N5 1060 aaKnown RBP19.64■□□□□ 0.73
COL7A1-204ENST00000462475 C19orf81C9J6K1 198 aa19.63■□□□□ 0.73
COL7A1-204ENST00000462475 GH2P01242 217 aa19.63■□□□□ 0.73
COL7A1-204ENST00000462475 USP5P45974 858 aa19.63■□□□□ 0.73
COL7A1-204ENST00000462475 ZBED9Q6R2W3 1325 aa19.62■□□□□ 0.73
COL7A1-204ENST00000462475 ERC1Q8IUD2 1116 aa19.62■□□□□ 0.73
COL7A1-204ENST00000462475 DIS3LQ8TF46 1054 aaKnown RBP19.62■□□□□ 0.73
COL7A1-204ENST00000462475 TRIB2Q92519 343 aa19.62■□□□□ 0.73
COL7A1-204ENST00000462475 IL1RAPL2Q9NP60 686 aa19.62■□□□□ 0.73
COL7A1-204ENST00000462475 EMILIN3Q9NT22 766 aa19.62■□□□□ 0.73
COL7A1-204ENST00000462475 MAP3K12Q12852 859 aa19.61■□□□□ 0.73
COL7A1-204ENST00000462475 TATDN1Q6P1N9 297 aa19.61■□□□□ 0.73
COL7A1-204ENST00000462475 POTEEQ6S8J3 1075 aa19.61■□□□□ 0.73
COL7A1-204ENST00000462475 CERS3Q8IU89 383 aa19.61■□□□□ 0.73
COL7A1-204ENST00000462475 GPRC5AQ8NFJ5 357 aa19.61■□□□□ 0.73
COL7A1-204ENST00000462475 PAWRQ96IZ0 340 aaKnown RBP19.61■□□□□ 0.73
COL7A1-204ENST00000462475 PRO3102Q9H379 93 aa19.61■□□□□ 0.73
COL7A1-204ENST00000462475 RBPJLQ9UBG7 517 aa19.61■□□□□ 0.73
COL7A1-204ENST00000462475 NR2E3Q9Y5X4 410 aa19.61■□□□□ 0.73
COL7A1-204ENST00000462475 PLXNB2O15031 1838 aa19.6■□□□□ 0.73
COL7A1-204ENST00000462475 CAPN2P17655 700 aa19.6■□□□□ 0.73
COL7A1-204ENST00000462475 CYP2B6P20813 491 aa19.6■□□□□ 0.73
COL7A1-204ENST00000462475 USP17L2Q6R6M4 530 aa19.6■□□□□ 0.73
COL7A1-204ENST00000462475 RIOK1Q9BRS2 568 aaKnown RBP19.6■□□□□ 0.73
COL7A1-204ENST00000462475 EHD4Q9H223 541 aa19.6■□□□□ 0.73
COL7A1-204ENST00000462475 SERPINB13Q9UIV8 391 aa19.6■□□□□ 0.73
COL7A1-204ENST00000462475 ERVK-9P63128 1117 aa19.59■□□□□ 0.73
COL7A1-204ENST00000462475 ERVK-24P63145 666 aa19.59■□□□□ 0.73
COL7A1-204ENST00000462475 ZYXQ15942 572 aaKnown RBP19.59■□□□□ 0.73
COL7A1-204ENST00000462475 RHPN1Q8TCX5 695 aa19.59■□□□□ 0.73
COL7A1-204ENST00000462475 FEZ1Q99689 392 aa19.59■□□□□ 0.73
COL7A1-204ENST00000462475 PAGR1Q9BTK6 254 aa19.59■□□□□ 0.73
COL7A1-204ENST00000462475 PORCNQ9H237 461 aa19.59■□□□□ 0.73
COL7A1-204ENST00000462475 RPTORQ8N122 1335 aa19.58■□□□□ 0.73
COL7A1-204ENST00000462475 EVI5O60447 810 aa19.58■□□□□ 0.72
COL7A1-204ENST00000462475 Q3C1V9 767 aa19.58■□□□□ 0.72
COL7A1-204ENST00000462475 DIEXFQ68CQ4 756 aaKnown RBP19.58■□□□□ 0.72
COL7A1-204ENST00000462475 SOCS4Q8WXH5 440 aa19.58■□□□□ 0.72
COL7A1-204ENST00000462475 C12orf42Q96LP6 360 aa19.58■□□□□ 0.72
COL7A1-204ENST00000462475 NUDT12Q9BQG2 462 aa19.58■□□□□ 0.72
COL7A1-204ENST00000462475 HMX1Q9NP08 348 aaPredicted RBP19.58■□□□□ 0.72
COL7A1-204ENST00000462475 DDX60LQ5H9U9 1706 aaKnown RBP19.58■□□□□ 0.72
COL7A1-204ENST00000462475 MYH1P12882 1939 aa19.57■□□□□ 0.72
COL7A1-204ENST00000462475 LAMA3Q16787 3333 aa19.57■□□□□ 0.72
COL7A1-204ENST00000462475 MAPK4P31152 587 aa19.57■□□□□ 0.72
COL7A1-204ENST00000462475 PLCD1P51178 756 aa19.57■□□□□ 0.72
COL7A1-204ENST00000462475 RAB3GAP1Q15042 981 aa19.57■□□□□ 0.72
COL7A1-204ENST00000462475 MAP3K21Q5TCX8 1036 aa19.57■□□□□ 0.72
COL7A1-204ENST00000462475 TMED8Q6PL24 325 aaPredicted RBP19.57■□□□□ 0.72
COL7A1-204ENST00000462475 NECAB2Q7Z6G3 386 aa19.57■□□□□ 0.72
COL7A1-204ENST00000462475 TTC6Q86TZ1 520 aa19.57■□□□□ 0.72
COL7A1-204ENST00000462475 ACER1Q8TDN7 264 aa19.57■□□□□ 0.72
COL7A1-204ENST00000462475 APBB1O00213 710 aa19.56■□□□□ 0.72
COL7A1-204ENST00000462475 PRKAR2AP13861 404 aaKnown RBP19.56■□□□□ 0.72
COL7A1-204ENST00000462475 PDE6AP16499 860 aa19.56■□□□□ 0.72
COL7A1-204ENST00000462475 SHMT1P34896 483 aa19.56■□□□□ 0.72
COL7A1-204ENST00000462475 MNX1P50219 401 aaPredicted RBP19.56■□□□□ 0.72
COL7A1-204ENST00000462475 EVX2Q03828 476 aa19.56■□□□□ 0.72
COL7A1-204ENST00000462475 PDE3AQ14432 1141 aa19.56■□□□□ 0.72
COL7A1-204ENST00000462475 ABCB5Q2M3G0 1257 aa19.56■□□□□ 0.72
COL7A1-204ENST00000462475 CERKLQ49MI3 558 aaPredicted RBP19.56■□□□□ 0.72
COL7A1-204ENST00000462475 HSP90AB4PQ58FF6 505 aa19.56■□□□□ 0.72
COL7A1-204ENST00000462475 GPR142Q7Z601 462 aa19.56■□□□□ 0.72
COL7A1-204ENST00000462475 ANKLE1Q8NAG6 615 aa19.56■□□□□ 0.72
COL7A1-204ENST00000462475 GTF3C2Q8WUA4 911 aaPredicted RBP19.56■□□□□ 0.72
COL7A1-204ENST00000462475 USP6NLQ92738 828 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms