RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 A0A087WUV0 522 aaPredicted RBP7.9□□□□□ -1.15
SYNE1-216ENST00000461872 MNAT1P51948 309 aa7.9□□□□□ -1.15
SYNE1-216ENST00000461872 PTH1RQ03431 593 aa7.9□□□□□ -1.15
SYNE1-216ENST00000461872 TMCO5BA8MYB1 307 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 RPL13P26373 211 aaKnown RBP7.89□□□□□ -1.15
SYNE1-216ENST00000461872 SUCLG2Q96I99 432 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 NF2P35240 595 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 CCDC96Q2M329 555 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 IFIT1BQ5T764 474 aaKnown RBP7.89□□□□□ -1.15
SYNE1-216ENST00000461872 EDEM3Q9BZQ6 932 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 SLFN14P0C7P3 912 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 CCDC26Q8TAB7 109 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 LPIN2Q92539 896 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 DHTKD1Q96HY7 919 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-216ENST00000461872 FUCA2Q9BTY2 467 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 ANKRD2Q9GZV1 360 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 MYO5BQ9ULV0 1848 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 ST5P78524 1137 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 IQCB1Q15051 598 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 CCDC38Q502W7 563 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 CCDC121Q6ZUS5 278 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 CCDC77Q9BR77 488 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 KRT24Q2M2I5 525 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 KLHL10Q6JEL2 608 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 C6orf50Q9HD87 102 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 PA2G4Q9UQ80 394 aaKnown RBP7.89□□□□□ -1.15
SYNE1-216ENST00000461872 GPAA1O43292 621 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 SLC8A1P32418 973 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 UBXN1Q04323 297 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 DRP2Q13474 957 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 C3orf20Q8ND61 904 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 SECISBP2LQ93073 1101 aaKnown RBP7.89□□□□□ -1.15
SYNE1-216ENST00000461872 VPS18Q9P253 973 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 ITIH6Q6UXX5 1313 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 PCCAP05165 728 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-216ENST00000461872 RABL6Q3YEC7 729 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-216ENST00000461872 ZNF569Q5MCW4 686 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 SGMS1Q86VZ5 419 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 OTUD6BQ8N6M0 293 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 KAT14Q9H8E8 782 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 SCRN1Q12765 414 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 KRT25Q7Z3Z0 450 aa7.89□□□□□ -1.15
SYNE1-216ENST00000461872 ERCC6LQ2NKX8 1250 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 RESP18Q5W5W9 173 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 DIS3L2Q8IYB7 885 aaKnown RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 ZSCAN20P17040 1043 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 DTHD1Q6ZMT9 781 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 RWDD2AQ9UIY3 292 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 DIP2BQ9P265 1576 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 FOXO3O43524 673 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 KCNA6P17658 529 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 PARP2Q9UGN5 583 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 FEZ2Q9UHY8 353 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 ATP2B1P20020 1258 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 AKNAD1Q5T1N1 836 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 MTRF1LQ9UGC7 380 aaKnown RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 KIF23Q02241 960 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 TRIM28Q13263 835 aaKnown RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 CWF19L2Q2TBE0 894 aaKnown RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 FMR1NBQ8N0W7 255 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 SH3GLB2Q9NR46 395 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 AATFQ9NY61 560 aaKnown RBP eCLIP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 TRMT112Q9UI30 125 aaKnown RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 DENND2AQ9ULE3 1009 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 ACTN4O43707 911 aaKnown RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 NBPF9Q3BBW0 867 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 FBXO38Q6PIJ6 1188 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 NEK11Q8NG66 645 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 WHAMMQ8TF30 809 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 CLCN6P51797 869 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 EPHB4P54760 987 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 CYP21A2P08686 494 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 INPP5BP32019 993 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 TANGO6Q9C0B7 1094 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 CNOT10Q9H9A5 744 aaKnown RBP7.88□□□□□ -1.15
SYNE1-216ENST00000461872 TUBE1Q9UJT0 475 aa7.88□□□□□ -1.15
SYNE1-216ENST00000461872 A0A1W2PQC6 194 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 LONRF2Q1L5Z9 754 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 C8orf74Q6P047 294 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 DBNDD2Q9BQY9 259 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 CDHR2Q9BYE9 1310 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 TADA3O75528 432 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 HSPA6P17066 643 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 DESP17661 470 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 ITIH3Q06033 890 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 RNF10Q8N5U6 811 aaKnown RBP7.87□□□□□ -1.15
SYNE1-216ENST00000461872 CARD6Q9BX69 1037 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 DBNLQ9UJU6 430 aaKnown RBP7.87□□□□□ -1.15
SYNE1-216ENST00000461872 KRT28Q7Z3Y7 464 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 NT5C3AQ9H0P0 336 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 RSPH14Q9UHP6 348 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 SOS2Q07890 1332 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-216ENST00000461872 MAGEA9P43362 315 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 SLC9C1Q4G0N8 1177 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 ZCRB1Q8TBF4 217 aaKnown RBP7.87□□□□□ -1.15
SYNE1-216ENST00000461872 RSRC1Q96IZ7 334 aaKnown RBP7.87□□□□□ -1.15
SYNE1-216ENST00000461872 FAM208AQ9UK61 1670 aaKnown RBP7.87□□□□□ -1.15
SYNE1-216ENST00000461872 FMNL1O95466 1100 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-216ENST00000461872 IDEP14735 1019 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 CYP2C19P33261 490 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms