RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 PRKAB2O43741 272 aa14.2□□□□□ -0.14
VPS52-213ENST00000461743 PLCD1P51178 756 aa14.2□□□□□ -0.14
VPS52-213ENST00000461743 MFAP1P55081 439 aaKnown RBP14.2□□□□□ -0.14
VPS52-213ENST00000461743 C12orf60Q5U649 245 aa14.2□□□□□ -0.14
VPS52-213ENST00000461743 PRRT2Q7Z6L0 340 aaPredicted RBP14.2□□□□□ -0.14
VPS52-213ENST00000461743 BRI3BPQ8WY22 251 aa14.2□□□□□ -0.14
VPS52-213ENST00000461743 ZBTB21Q9ULJ3 1066 aa14.2□□□□□ -0.14
VPS52-213ENST00000461743 AFG3L2Q9Y4W6 797 aa14.2□□□□□ -0.14
VPS52-213ENST00000461743 PATL2C9JE40 543 aaKnown RBP14.19□□□□□ -0.14
VPS52-213ENST00000461743 TRPA1O75762 1119 aa14.19□□□□□ -0.14
VPS52-213ENST00000461743 SHMT1P34896 483 aa14.19□□□□□ -0.14
VPS52-213ENST00000461743 C16orf86Q6ZW13 317 aa14.19□□□□□ -0.14
VPS52-213ENST00000461743 FASTKD5Q7L8L6 764 aaKnown RBP14.19□□□□□ -0.14
VPS52-213ENST00000461743 ANKRD23Q86SG2 305 aa14.19□□□□□ -0.14
VPS52-213ENST00000461743 RILPL2Q969X0 211 aa14.19□□□□□ -0.14
VPS52-213ENST00000461743 WDR18Q9BV38 432 aa14.19□□□□□ -0.14
VPS52-213ENST00000461743 EPB41L4AQ9HCS5 686 aaPredicted RBP14.19□□□□□ -0.14
VPS52-213ENST00000461743 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.19□□□□□ -0.14
VPS52-213ENST00000461743 SLC45A1Q9Y2W3 748 aa14.19□□□□□ -0.14
VPS52-213ENST00000461743 ZHX2Q9Y6X8 837 aa14.19□□□□□ -0.14
VPS52-213ENST00000461743 USP17L12C9JPN9 530 aa14.18□□□□□ -0.14
VPS52-213ENST00000461743 USP17L21D6R901 530 aa14.18□□□□□ -0.14
VPS52-213ENST00000461743 SLURP2P0DP57 97 aa14.18□□□□□ -0.14
VPS52-213ENST00000461743 TDO2P48775 406 aa14.18□□□□□ -0.14
VPS52-213ENST00000461743 LBX1P52954 281 aa14.18□□□□□ -0.14
VPS52-213ENST00000461743 SLC4A8Q2Y0W8 1093 aa14.18□□□□□ -0.14
VPS52-213ENST00000461743 CERKLQ49MI3 558 aaPredicted RBP14.18□□□□□ -0.14
VPS52-213ENST00000461743 MCMDC2Q4G0Z9 681 aa14.18□□□□□ -0.14
VPS52-213ENST00000461743 CTR9Q6PD62 1173 aa14.18□□□□□ -0.14
VPS52-213ENST00000461743 PROCA1Q8NCQ7 364 aaPredicted RBP14.18□□□□□ -0.14
VPS52-213ENST00000461743 ZNF280CQ8ND82 737 aa14.18□□□□□ -0.14
VPS52-213ENST00000461743 CCDC136Q96JN2 1154 aa14.18□□□□□ -0.14
VPS52-213ENST00000461743 CCDC171Q6TFL3 1326 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 RAD50Q92878 1312 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 A0A0D9SFI3 127 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 GDF11O95390 407 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 GSPT1P15170 499 aaKnown RBP14.17□□□□□ -0.14
VPS52-213ENST00000461743 SDSP20132 328 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 RRP1BQ14684 758 aaKnown RBP14.17□□□□□ -0.14
VPS52-213ENST00000461743 ABCB5Q2M3G0 1257 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 IFNL3Q8IZI9 196 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 CCDC17Q96LX7 622 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 SEC62Q99442 399 aaKnown RBP14.17□□□□□ -0.14
VPS52-213ENST00000461743 PTPN18Q99952 460 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 NAPBQ9H115 298 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 ZNF287Q9HBT7 754 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 CABP5Q9NP86 173 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 DIAPH3Q9NSV4 1193 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 A0A0G2JMZ2 1700 aa14.17□□□□□ -0.14
VPS52-213ENST00000461743 BTBD19C9JJ37 291 aa14.16□□□□□ -0.14
VPS52-213ENST00000461743 APPP05067 770 aa14.16□□□□□ -0.14
VPS52-213ENST00000461743 CYP2D6P10635 497 aa14.16□□□□□ -0.14
VPS52-213ENST00000461743 NMIQ13287 307 aaPredicted RBP14.16□□□□□ -0.14
VPS52-213ENST00000461743 MOGSQ13724 837 aa14.16□□□□□ -0.14
VPS52-213ENST00000461743 TAF1CQ15572 869 aaPredicted RBP14.16□□□□□ -0.14
VPS52-213ENST00000461743 ALX1Q15699 326 aa14.16□□□□□ -0.14
VPS52-213ENST00000461743 SH3D19Q5HYK7 790 aa14.16□□□□□ -0.14
VPS52-213ENST00000461743 TMEM179Q6ZVK1 233 aa14.16□□□□□ -0.14
VPS52-213ENST00000461743 PLIN4Q96Q06 1357 aa14.16□□□□□ -0.14
VPS52-213ENST00000461743 TRIM75PA6NK02 468 aa14.15□□□□□ -0.14
VPS52-213ENST00000461743 C19orf81C9J6K1 198 aa14.15□□□□□ -0.14
VPS52-213ENST00000461743 GH2P01242 217 aa14.15□□□□□ -0.14
VPS52-213ENST00000461743 SLC3A2P08195 630 aaKnown RBP14.15□□□□□ -0.14
VPS52-213ENST00000461743 PABPC4Q13310 644 aaKnown RBP eCLIP14.15□□□□□ -0.14
VPS52-213ENST00000461743 FAM43AQ8N2R8 423 aa14.15□□□□□ -0.14
VPS52-213ENST00000461743 FAM227BQ96M60 508 aa14.15□□□□□ -0.14
VPS52-213ENST00000461743 PARK7Q99497 189 aaKnown RBP14.15□□□□□ -0.14
VPS52-213ENST00000461743 ZFYVE28Q9HCC9 887 aa14.15□□□□□ -0.14
VPS52-213ENST00000461743 TSKSQ9UJT2 592 aa14.15□□□□□ -0.14
VPS52-213ENST00000461743 PNMA3Q9UL41 463 aa14.15□□□□□ -0.14
VPS52-213ENST00000461743 AGTPBP1Q9UPW5 1226 aa14.15□□□□□ -0.14
VPS52-213ENST00000461743 RLFQ13129 1914 aa14.15□□□□□ -0.14
VPS52-213ENST00000461743 USP17L10C9JJH3 530 aa14.14□□□□□ -0.15
VPS52-213ENST00000461743 CDK8P49336 464 aa14.14□□□□□ -0.15
VPS52-213ENST00000461743 USP14P54578 494 aa14.14□□□□□ -0.15
VPS52-213ENST00000461743 BACE1P56817 501 aa14.14□□□□□ -0.15
VPS52-213ENST00000461743 SPP2Q13103 211 aa14.14□□□□□ -0.15
VPS52-213ENST00000461743 CRHR2Q13324 411 aa14.14□□□□□ -0.15
VPS52-213ENST00000461743 CCDC129Q6ZRS4 1044 aa14.14□□□□□ -0.15
VPS52-213ENST00000461743 SH2D4AQ9H788 454 aa14.14□□□□□ -0.15
VPS52-213ENST00000461743 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.14□□□□□ -0.15
VPS52-213ENST00000461743 ADGRA2Q96PE1 1338 aa14.14□□□□□ -0.15
VPS52-213ENST00000461743 ZSWIM8A7E2V4 1837 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 CYP2D7A0A087X1C5 515 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 GPR25O00155 361 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 FOXP2O15409 715 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 TBC1D8O95759 1140 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 HSPD1P10809 573 aaKnown RBP14.13□□□□□ -0.15
VPS52-213ENST00000461743 NT5C2P49902 561 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 EVX2Q03828 476 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 PDE4BQ07343 736 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 MTMR2Q13614 643 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 GADL1Q6ZQY3 521 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 ZNF589Q86UQ0 364 aaPredicted RBP14.13□□□□□ -0.15
VPS52-213ENST00000461743 SLC44A5Q8NCS7 719 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 RUFY2Q8WXA3 655 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 DYNLL2Q96FJ2 89 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 C12orf42Q96LP6 360 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 ANAPC4Q9UJX5 808 aa14.13□□□□□ -0.15
VPS52-213ENST00000461743 COL11A1P12107 1806 aaPredicted RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms