RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 FBXL18Q96ME1 805 aa20.49■□□□□ 0.87
SF3B4-202ENST00000457312 USP40Q9NVE5 1235 aa20.49■□□□□ 0.87
SF3B4-202ENST00000457312 CYBAP13498 195 aa20.48■□□□□ 0.87
SF3B4-202ENST00000457312 ADCYAP1R1P41586 468 aa20.48■□□□□ 0.87
SF3B4-202ENST00000457312 ERVK-9P63128 1117 aa20.48■□□□□ 0.87
SF3B4-202ENST00000457312 ERVK-24P63145 666 aa20.48■□□□□ 0.87
SF3B4-202ENST00000457312 Q3C1V9 767 aa20.48■□□□□ 0.87
SF3B4-202ENST00000457312 SH3D19Q5HYK7 790 aa20.48■□□□□ 0.87
SF3B4-202ENST00000457312 FERMT2Q96AC1 680 aa20.48■□□□□ 0.87
SF3B4-202ENST00000457312 RBPJLQ9UBG7 517 aa20.48■□□□□ 0.87
SF3B4-202ENST00000457312 DDTLA6NHG4 134 aaPredicted RBP20.47■□□□□ 0.87
SF3B4-202ENST00000457312 ENTPD3O75355 529 aa20.47■□□□□ 0.87
SF3B4-202ENST00000457312 EPHA10Q5JZY3 1008 aa20.47■□□□□ 0.87
SF3B4-202ENST00000457312 IDI2Q9BXS1 227 aa20.47■□□□□ 0.87
SF3B4-202ENST00000457312 PUS3Q9BZE2 481 aaKnown RBP20.47■□□□□ 0.87
SF3B4-202ENST00000457312 CYP2C19P33261 490 aa20.46■□□□□ 0.87
SF3B4-202ENST00000457312 SKIV2LQ15477 1246 aaKnown RBP20.46■□□□□ 0.87
SF3B4-202ENST00000457312 CAVIN4Q5BKX8 364 aa20.46■□□□□ 0.87
SF3B4-202ENST00000457312 G2E3Q7L622 706 aa20.46■□□□□ 0.87
SF3B4-202ENST00000457312 ZSCAN29Q8IWY8 852 aaPredicted RBP20.46■□□□□ 0.87
SF3B4-202ENST00000457312 HERVK_113Q902F9 699 aa20.46■□□□□ 0.87
SF3B4-202ENST00000457312 EDC3Q96F86 508 aaKnown RBP20.46■□□□□ 0.87
SF3B4-202ENST00000457312 NKX2-4Q9H2Z4 354 aa20.46■□□□□ 0.87
SF3B4-202ENST00000457312 CD320Q9NPF0 282 aa20.46■□□□□ 0.87
SF3B4-202ENST00000457312 A0A0G2JMZ2 1700 aa20.46■□□□□ 0.87
SF3B4-202ENST00000457312 IGHA2P01877 340 aa20.45■□□□□ 0.86
SF3B4-202ENST00000457312 FOXK2Q01167 660 aa20.45■□□□□ 0.86
SF3B4-202ENST00000457312 RAB30Q15771 203 aa20.45■□□□□ 0.86
SF3B4-202ENST00000457312 ANO1Q5XXA6 986 aa20.45■□□□□ 0.86
SF3B4-202ENST00000457312 CCAR1Q8IX12 1150 aaKnown RBP20.45■□□□□ 0.86
SF3B4-202ENST00000457312 MYCNP04198 464 aaPredicted RBP20.44■□□□□ 0.86
SF3B4-202ENST00000457312 HOXA7P31268 230 aaPredicted RBP20.44■□□□□ 0.86
SF3B4-202ENST00000457312 LINS1Q8NG48 757 aa20.44■□□□□ 0.86
SF3B4-202ENST00000457312 TBC1D2Q9BYX2 928 aa20.44■□□□□ 0.86
SF3B4-202ENST00000457312 KCNH6Q9H252 994 aa20.44■□□□□ 0.86
SF3B4-202ENST00000457312 CACNA1BQ00975 2339 aa20.44■□□□□ 0.86
SF3B4-202ENST00000457312 FAM196BA6NMK8 535 aa20.43■□□□□ 0.86
SF3B4-202ENST00000457312 PQBP1O60828 265 aaKnown RBP20.43■□□□□ 0.86
SF3B4-202ENST00000457312 PRDX5P30044 214 aa20.43■□□□□ 0.86
SF3B4-202ENST00000457312 LRRC41Q15345 812 aa20.43■□□□□ 0.86
SF3B4-202ENST00000457312 TMEM240Q5SV17 173 aa20.43■□□□□ 0.86
SF3B4-202ENST00000457312 C16orf59Q7L2K0 433 aa20.43■□□□□ 0.86
SF3B4-202ENST00000457312 IFT57Q9NWB7 429 aa20.43■□□□□ 0.86
SF3B4-202ENST00000457312 MSRAQ9UJ68 235 aa20.43■□□□□ 0.86
SF3B4-202ENST00000457312 YBX2Q9Y2T7 364 aaKnown RBP20.43■□□□□ 0.86
SF3B4-202ENST00000457312 ZNF236Q9UL36 1845 aa20.43■□□□□ 0.86
SF3B4-202ENST00000457312 SMCHD1A6NHR9 2005 aa20.43■□□□□ 0.86
SF3B4-202ENST00000457312 HOXC6P09630 235 aa20.42■□□□□ 0.86
SF3B4-202ENST00000457312 ATP2B2Q01814 1243 aa20.42■□□□□ 0.86
SF3B4-202ENST00000457312 NPLOC4Q8TAT6 608 aa20.42■□□□□ 0.86
SF3B4-202ENST00000457312 UIMC1Q96RL1 719 aa20.42■□□□□ 0.86
SF3B4-202ENST00000457312 PAGR1Q9BTK6 254 aa20.42■□□□□ 0.86
SF3B4-202ENST00000457312 OSBPL5Q9H0X9 879 aaPredicted RBP20.42■□□□□ 0.86
SF3B4-202ENST00000457312 DDX4Q9NQI0 724 aaKnown RBP20.42■□□□□ 0.86
SF3B4-202ENST00000457312 TMEM39AQ9NV64 488 aa20.42■□□□□ 0.86
SF3B4-202ENST00000457312 NDUFB9Q9Y6M9 179 aa20.42■□□□□ 0.86
SF3B4-202ENST00000457312 MROH5Q6ZUA9 1318 aa20.42■□□□□ 0.86
SF3B4-202ENST00000457312 TRIM26Q12899 539 aaPredicted RBP20.41■□□□□ 0.86
SF3B4-202ENST00000457312 MTMR2Q13614 643 aa20.41■□□□□ 0.86
SF3B4-202ENST00000457312 TSPYL6Q8N831 410 aa20.41■□□□□ 0.86
SF3B4-202ENST00000457312 SLC28A3Q9HAS3 691 aa20.41■□□□□ 0.86
SF3B4-202ENST00000457312 COG5Q9UP83 839 aa20.41■□□□□ 0.86
SF3B4-202ENST00000457312 PHF24Q9UPV7 400 aa20.41■□□□□ 0.86
SF3B4-202ENST00000457312 WDR66Q8TBY9 1149 aa20.4■□□□□ 0.86
SF3B4-202ENST00000457312 DNAAF4Q8WXU2 420 aa20.4■□□□□ 0.86
SF3B4-202ENST00000457312 PHOX2BQ99453 314 aa20.4■□□□□ 0.86
SF3B4-202ENST00000457312 CHMP4AQ9BY43 222 aa20.4■□□□□ 0.86
SF3B4-202ENST00000457312 CWC22Q9HCG8 908 aaKnown RBP20.4■□□□□ 0.86
SF3B4-202ENST00000457312 CACNA1FO60840 1977 aa20.39■□□□□ 0.86
SF3B4-202ENST00000457312 SLC15A5A6NIM6 579 aa20.39■□□□□ 0.85
SF3B4-202ENST00000457312 USP17L5A8MUK1 530 aa20.39■□□□□ 0.85
SF3B4-202ENST00000457312 ST18O60284 1047 aa20.39■□□□□ 0.85
SF3B4-202ENST00000457312 TBC1D12O60347 775 aa20.39■□□□□ 0.85
SF3B4-202ENST00000457312 FAAP100Q0VG06 881 aa20.39■□□□□ 0.85
SF3B4-202ENST00000457312 FAM47AQ5JRC9 791 aa20.39■□□□□ 0.85
SF3B4-202ENST00000457312 VGLL2Q8N8G2 317 aa20.39■□□□□ 0.85
SF3B4-202ENST00000457312 SLC44A5Q8NCS7 719 aa20.39■□□□□ 0.85
SF3B4-202ENST00000457312 GTF3C2Q8WUA4 911 aaPredicted RBP20.39■□□□□ 0.85
SF3B4-202ENST00000457312 SEPT4O43236 478 aa20.38■□□□□ 0.85
SF3B4-202ENST00000457312 PTPREP23469 700 aa20.38■□□□□ 0.85
SF3B4-202ENST00000457312 PPIGQ13427 754 aaKnown RBP eCLIP20.38■□□□□ 0.85
SF3B4-202ENST00000457312 GRB14Q14449 540 aa20.38■□□□□ 0.85
SF3B4-202ENST00000457312 RRP1BQ14684 758 aaKnown RBP20.38■□□□□ 0.85
SF3B4-202ENST00000457312 STK31Q9BXU1 1019 aa20.38■□□□□ 0.85
SF3B4-202ENST00000457312 KIF16BQ96L93 1317 aa20.37■□□□□ 0.85
SF3B4-202ENST00000457312 GLRX3O76003 335 aaKnown RBP20.37■□□□□ 0.85
SF3B4-202ENST00000457312 TIMP1P01033 207 aa20.37■□□□□ 0.85
SF3B4-202ENST00000457312 GNAI1P63096 354 aa20.37■□□□□ 0.85
SF3B4-202ENST00000457312 RUNDC1Q96C34 613 aa20.37■□□□□ 0.85
SF3B4-202ENST00000457312 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.37■□□□□ 0.85
SF3B4-202ENST00000457312 MTCH2Q9Y6C9 303 aa20.37■□□□□ 0.85
SF3B4-202ENST00000457312 C5orf42Q9H799 3197 aa20.37■□□□□ 0.85
SF3B4-202ENST00000457312 SIPA1L1O43166 1804 aa20.37■□□□□ 0.85
SF3B4-202ENST00000457312 CNMDO75829 334 aa20.36■□□□□ 0.85
SF3B4-202ENST00000457312 ZEB1P37275 1124 aaPredicted RBP20.36■□□□□ 0.85
SF3B4-202ENST00000457312 CAP2P40123 477 aa20.36■□□□□ 0.85
SF3B4-202ENST00000457312 BACE1P56817 501 aa20.36■□□□□ 0.85
SF3B4-202ENST00000457312 PICALMQ13492 652 aa20.36■□□□□ 0.85
SF3B4-202ENST00000457312 MFSD5Q6N075 450 aa20.36■□□□□ 0.85
SF3B4-202ENST00000457312 CCDC174Q6PII3 467 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms