RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ANKRD18BA2A2Z9 1011 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 ENPP3O14638 875 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 CCP110O43303 1012 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 HTATSF1O43719 755 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 DNAJC6O75061 913 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 PPFIA2O75334 1257 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 FBXO24O75426 580 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 TPPPO94811 219 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 FOSL1P15407 271 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 ATF3P18847 181 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 RRM1P23921 792 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 NOP2P46087 812 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 CLK1P49759 484 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 CHMP4BP1P59074 171 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 AMPD3Q01432 767 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 TRIM32Q13049 653 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 PLEKHG6Q3KR16 790 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 PLA2G2CQ5R387 149 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 CCDC174Q6PII3 467 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 CCDC73Q6ZRK6 1079 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 UBE2Q1Q7Z7E8 422 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 KIAA0825Q8IV33 1275 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 SH3TC2Q8TF17 1288 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 ANAPC16Q96DE5 110 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 TIGD1Q96MW7 591 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 MPHOSPH9Q99550 1183 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 SPC25Q9HBM1 224 aa5.65□□□□□ -1.5
CCDC88A-209ENST00000456975 NCOA3Q9Y6Q9 1424 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 H0YHG0 523 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 GOLGA6L22H0YM25 854 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 MTA2O94776 668 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 NR3C2P08235 984 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 VARSP26640 1264 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 SARNPP82979 210 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 NFX1Q12986 1120 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 MAP3K11Q16584 847 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 TTC39BQ5VTQ0 682 aaPredicted RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 MORC1Q86VD1 984 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 LMNTD2Q8IXW0 634 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 FAM184AQ8NB25 1140 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 TNPO1Q92973 898 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 XAGE2Q96GT9 111 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 EAF1Q96JC9 268 aaPredicted RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 DEPDC7Q96QD5 511 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 ALDH8A1Q9H2A2 487 aaPredicted RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 RWDD1Q9H446 243 aaPredicted RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 TRPM2O94759 1503 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 KLF4O43474 513 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 ST18O60284 1047 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 XBP1P17861 261 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 GUCY2CP25092 1073 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 DHX8Q14562 1220 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 TRIP4Q15650 581 aaPredicted RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 ZSCAN26Q16670 478 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 ALDH1L2Q3SY69 923 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 TJAP1Q5JTD0 557 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 CCDC81Q6ZN84 652 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 MYO1HQ8N1T3 1032 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 LILRB2Q8N423 598 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 EHBP1Q8NDI1 1231 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 TDRD7Q8NHU6 1098 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 UHMK1Q8TAS1 419 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 ESYT1Q9BSJ8 1104 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 ODF2LQ9ULJ1 636 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 NOL7Q9UMY1 257 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 SLC45A1Q9Y2W3 748 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 PNPLA6Q8IY17 1366 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 SPHKAPQ2M3C7 1700 aa5.64□□□□□ -1.51
CCDC88A-209ENST00000456975 XRN1Q8IZH2 1706 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 CCDC66A2RUB6 948 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 PPFIA3O75145 1194 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 MICAL2O94851 1124 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 FAM160A1Q05DH4 1040 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 WASHC5Q12768 1159 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 TRDNQ13061 729 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 RAB33AQ14088 237 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 TEAD4Q15561 434 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 BRINP3Q76B58 766 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 OTUD6AQ7L8S5 288 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 KRT77Q7Z794 578 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 CHCHD4Q8N4Q1 142 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 CELF2-AS1Q8N7Q2 184 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 KDF1Q8NAX2 398 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 ZNF280CQ8ND82 737 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 NEK9Q8TD19 979 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 DDX56Q9NY93 547 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 TTF2Q9UNY4 1162 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 KIF3AQ9Y496 699 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 HRH3Q9Y5N1 445 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 PLEKHG1Q9ULL1 1385 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 TMEM131LA2VDJ0 1609 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 CCDC196A0A1B0GTZ2 297 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 ESYT3A0FGR9 886 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 GADD45BO75293 160 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 ADAMTS2O95450 1211 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 STIP1P31948 543 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 TNNT3P45378 269 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 ST13P50502 369 aaKnown RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms