RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TREML2Q5T2D2 321 aa25.64■■□□□ 1.7
HMGB3-205ENST00000455596 ZSCAN25Q6NSZ9 544 aa25.64■■□□□ 1.7
HMGB3-205ENST00000455596 TATDN1Q6P1N9 297 aa25.64■■□□□ 1.7
HMGB3-205ENST00000455596 SMCR8Q8TEV9 937 aaPredicted RBP25.64■■□□□ 1.7
HMGB3-205ENST00000455596 PTCH2Q9Y6C5 1203 aa25.64■■□□□ 1.7
HMGB3-205ENST00000455596 ECM2O94769 699 aaPredicted RBP25.63■■□□□ 1.69
HMGB3-205ENST00000455596 PSMC4P43686 418 aa25.63■■□□□ 1.69
HMGB3-205ENST00000455596 UBE3CQ15386 1083 aa25.63■■□□□ 1.69
HMGB3-205ENST00000455596 SDR42E1Q8WUS8 393 aa25.63■■□□□ 1.69
HMGB3-205ENST00000455596 ARMT1Q9H993 441 aa25.63■■□□□ 1.69
HMGB3-205ENST00000455596 MCM9Q9NXL9 1143 aa25.63■■□□□ 1.69
HMGB3-205ENST00000455596 PLCD1P51178 756 aa25.62■■□□□ 1.69
HMGB3-205ENST00000455596 PRMT2P55345 433 aa25.62■■□□□ 1.69
HMGB3-205ENST00000455596 PABPC4Q13310 644 aaKnown RBP eCLIP25.62■■□□□ 1.69
HMGB3-205ENST00000455596 MTMR2Q13614 643 aa25.62■■□□□ 1.69
HMGB3-205ENST00000455596 SHROOM1Q2M3G4 852 aaPredicted RBP25.62■■□□□ 1.69
HMGB3-205ENST00000455596 SLFNL1Q499Z3 407 aa25.62■■□□□ 1.69
HMGB3-205ENST00000455596 DCP1AQ9NPI6 582 aaPredicted RBP25.62■■□□□ 1.69
HMGB3-205ENST00000455596 C19orf81C9J6K1 198 aa25.61■■□□□ 1.69
HMGB3-205ENST00000455596 MBD4O95243 580 aa25.61■■□□□ 1.69
HMGB3-205ENST00000455596 FMNL1O95466 1100 aaPredicted RBP25.61■■□□□ 1.69
HMGB3-205ENST00000455596 HOXD10P28358 340 aa25.61■■□□□ 1.69
HMGB3-205ENST00000455596 CTGFP29279 349 aa25.61■■□□□ 1.69
HMGB3-205ENST00000455596 BACE1P56817 501 aa25.61■■□□□ 1.69
HMGB3-205ENST00000455596 ARMC5Q96C12 935 aa25.61■■□□□ 1.69
HMGB3-205ENST00000455596 TMOD4Q9NZQ9 345 aa25.61■■□□□ 1.69
HMGB3-205ENST00000455596 USP17L10C9JJH3 530 aa25.6■■□□□ 1.69
HMGB3-205ENST00000455596 GH2P01242 217 aa25.6■■□□□ 1.69
HMGB3-205ENST00000455596 CERKLQ49MI3 558 aaPredicted RBP25.6■■□□□ 1.69
HMGB3-205ENST00000455596 SLC9C1Q4G0N8 1177 aa25.6■■□□□ 1.69
HMGB3-205ENST00000455596 TRIM47Q96LD4 638 aa25.6■■□□□ 1.69
HMGB3-205ENST00000455596 ATP8A2Q9NTI2 1148 aa25.6■■□□□ 1.69
HMGB3-205ENST00000455596 CHGBP05060 677 aa25.59■■□□□ 1.69
HMGB3-205ENST00000455596 OSBPP22059 807 aa25.59■■□□□ 1.69
HMGB3-205ENST00000455596 FCGRTP55899 365 aa25.59■■□□□ 1.69
HMGB3-205ENST00000455596 TSHZ3Q63HK5 1081 aa25.59■■□□□ 1.69
HMGB3-205ENST00000455596 NBPF11Q86T75 865 aa25.59■■□□□ 1.69
HMGB3-205ENST00000455596 SRRDQ9UH36 339 aa25.59■■□□□ 1.69
HMGB3-205ENST00000455596 TTC41PQ6P2S7 1318 aa25.59■■□□□ 1.69
HMGB3-205ENST00000455596 SHMT1P34896 483 aa25.58■■□□□ 1.69
HMGB3-205ENST00000455596 GABPAQ06546 454 aa25.58■■□□□ 1.69
HMGB3-205ENST00000455596 ABCB5Q2M3G0 1257 aa25.58■■□□□ 1.69
HMGB3-205ENST00000455596 KBTBD3Q8NAB2 608 aa25.58■■□□□ 1.69
HMGB3-205ENST00000455596 CABP5Q9NP86 173 aa25.58■■□□□ 1.69
HMGB3-205ENST00000455596 PRKAB2O43741 272 aa25.57■■□□□ 1.68
HMGB3-205ENST00000455596 ANKRD13CQ8N6S4 541 aa25.57■■□□□ 1.68
HMGB3-205ENST00000455596 DOCK3Q8IZD9 2030 aa25.57■■□□□ 1.68
HMGB3-205ENST00000455596 ERC2O15083 957 aa25.56■■□□□ 1.68
HMGB3-205ENST00000455596 GCLCP48506 637 aaPredicted RBP25.56■■□□□ 1.68
HMGB3-205ENST00000455596 RAB3GAP1Q15042 981 aa25.56■■□□□ 1.68
HMGB3-205ENST00000455596 DDRGK1Q96HY6 314 aa25.56■■□□□ 1.68
HMGB3-205ENST00000455596 ZNF333Q96JL9 665 aa25.56■■□□□ 1.68
HMGB3-205ENST00000455596 PUS7LQ9H0K6 701 aaKnown RBP25.56■■□□□ 1.68
HMGB3-205ENST00000455596 ASCC2Q9H1I8 757 aaPredicted RBP25.56■■□□□ 1.68
HMGB3-205ENST00000455596 ZBTB47Q9UFB7 747 aaPredicted RBP25.56■■□□□ 1.68
HMGB3-205ENST00000455596 MYPNQ86TC9 1320 aa25.56■■□□□ 1.68
HMGB3-205ENST00000455596 EVX2Q03828 476 aa25.55■■□□□ 1.68
HMGB3-205ENST00000455596 AAMPQ13685 434 aa25.55■■□□□ 1.68
HMGB3-205ENST00000455596 FAM110CQ1W6H9 321 aa25.55■■□□□ 1.68
HMGB3-205ENST00000455596 AMOTL1Q8IY63 956 aa25.55■■□□□ 1.68
HMGB3-205ENST00000455596 TAOK2Q9UL54 1235 aa25.55■■□□□ 1.68
HMGB3-205ENST00000455596 SLC4A4Q9Y6R1 1079 aa25.55■■□□□ 1.68
HMGB3-205ENST00000455596 CYP2D6P10635 497 aa25.54■■□□□ 1.68
HMGB3-205ENST00000455596 HOXA7P31268 230 aaPredicted RBP25.54■■□□□ 1.68
HMGB3-205ENST00000455596 IRX3P78415 501 aaPredicted RBP25.54■■□□□ 1.68
HMGB3-205ENST00000455596 HDAC1Q13547 482 aaPredicted RBP25.54■■□□□ 1.68
HMGB3-205ENST00000455596 USP17L2Q6R6M4 530 aa25.54■■□□□ 1.68
HMGB3-205ENST00000455596 RAET1EQ8TD07 263 aa25.54■■□□□ 1.68
HMGB3-205ENST00000455596 GCC1Q96CN9 775 aa25.54■■□□□ 1.68
HMGB3-205ENST00000455596 FEZ1Q99689 392 aa25.54■■□□□ 1.68
HMGB3-205ENST00000455596 SWAP70Q9UH65 585 aa25.54■■□□□ 1.68
HMGB3-205ENST00000455596 ZFYP08048 801 aaPredicted RBP25.53■■□□□ 1.68
HMGB3-205ENST00000455596 SH3TC2Q8TF17 1288 aa25.53■■□□□ 1.68
HMGB3-205ENST00000455596 POTEFA5A3E0 1075 aa25.52■■□□□ 1.68
HMGB3-205ENST00000455596 GLRX3O76003 335 aaKnown RBP25.52■■□□□ 1.68
HMGB3-205ENST00000455596 MX1P20591 662 aa25.52■■□□□ 1.68
HMGB3-205ENST00000455596 LRRFIP1Q32MZ4 808 aaKnown RBP25.52■■□□□ 1.68
HMGB3-205ENST00000455596 ANKRD45Q5TZF3 282 aa25.52■■□□□ 1.68
HMGB3-205ENST00000455596 PI4K2BQ8TCG2 481 aa25.52■■□□□ 1.68
HMGB3-205ENST00000455596 OTUD7AQ8TE49 926 aaPredicted RBP25.52■■□□□ 1.68
HMGB3-205ENST00000455596 APPBP2Q92624 585 aa25.52■■□□□ 1.68
HMGB3-205ENST00000455596 TMEM106CQ9BVX2 250 aa25.52■■□□□ 1.68
HMGB3-205ENST00000455596 EMILIN3Q9NT22 766 aa25.52■■□□□ 1.68
HMGB3-205ENST00000455596 TNPO2O14787 897 aaKnown RBP25.51■■□□□ 1.67
HMGB3-205ENST00000455596 RNF113AO15541 343 aaKnown RBP25.51■■□□□ 1.67
HMGB3-205ENST00000455596 USP14P54578 494 aa25.51■■□□□ 1.67
HMGB3-205ENST00000455596 PRKCZQ05513 592 aa25.51■■□□□ 1.67
HMGB3-205ENST00000455596 ZYXQ15942 572 aaKnown RBP25.51■■□□□ 1.67
HMGB3-205ENST00000455596 C12orf60Q5U649 245 aa25.51■■□□□ 1.67
HMGB3-205ENST00000455596 HTTP42858 3142 aa25.5■■□□□ 1.67
HMGB3-205ENST00000455596 USP17L12C9JPN9 530 aa25.5■■□□□ 1.67
HMGB3-205ENST00000455596 USP17L21D6R901 530 aa25.5■■□□□ 1.67
HMGB3-205ENST00000455596 MPHOSPH10O00566 681 aaKnown RBP25.5■■□□□ 1.67
HMGB3-205ENST00000455596 GUCY1A2P33402 732 aa25.5■■□□□ 1.67
HMGB3-205ENST00000455596 SLC44A5Q8NCS7 719 aa25.5■■□□□ 1.67
HMGB3-205ENST00000455596 DYNLL2Q96FJ2 89 aa25.5■■□□□ 1.67
HMGB3-205ENST00000455596 C12orf42Q96LP6 360 aa25.5■■□□□ 1.67
HMGB3-205ENST00000455596 STRBPQ96SI9 672 aaKnown RBP25.5■■□□□ 1.67
HMGB3-205ENST00000455596 KIAA1683Q9H0B3 1180 aa25.5■■□□□ 1.67
HMGB3-205ENST00000455596 GABRQQ9UN88 632 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms