RNA–Protein interactions for RNA: ENST00000453246.5

ABCA13-205, Transcript of ATP binding cassette subfamily A member 13, human

TSL 2

Gene ABCA13, Length 4,275 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCA13-205	ENST00000453246	MYO1B	O43795	1136 aa		11.14	□□□□□ -0.63
ABCA13-205	ENST00000453246	PAFAH1B1	P43034	410 aa		11.14	□□□□□ -0.63
ABCA13-205	ENST00000453246	TSG101	Q99816	390 aa		11.14	□□□□□ -0.63
ABCA13-205	ENST00000453246	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
ABCA13-205	ENST00000453246	MMRN2	Q9H8L6	949 aa		11.14	□□□□□ -0.63
ABCA13-205	ENST00000453246		F8W031	263 aa	Predicted RBP	11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	FOXO4	P98177	505 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	ODF2	Q5BJF6	829 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	ATG9A	Q7Z3C6	839 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	NLRP10	Q86W26	655 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	PLA2G4D	Q86XP0	818 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	CEP112	Q8N8E3	955 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	GPATCH11	Q8N954	259 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	ATG3	Q9NT62	314 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	MYCN	P04198	464 aa	Predicted RBP	11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	ERCC3	P19447	782 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	KRT9	P35527	623 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	CYLC1	P35663	651 aa	Predicted RBP	11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	ZNF76	P36508	570 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	GNAQ	P50148	359 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	HLF	Q16534	295 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	LETM2	Q2VYF4	491 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	PARP10	Q53GL7	1025 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	SMARCC1	Q92922	1105 aa	Predicted RBP	11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	EEF2KMT	Q96G04	330 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	CCDC87	Q9NVE4	849 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	RBM28	Q9NW13	759 aa	Known RBP	11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	PPP2R2C	Q9Y2T4	447 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	WDR17	Q8IZU2	1322 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	KIF20B	Q96Q89	1820 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	MED23	Q9ULK4	1368 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	RABL6	Q3YEC7	729 aa	Predicted RBP	11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	FMR1NB	Q8N0W7	255 aa	Predicted RBP	11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	TTLL11	Q8NHH1	800 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	TAF4B	Q92750	862 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	DENND2A	Q9ULE3	1009 aa		11.13	□□□□□ -0.63
ABCA13-205	ENST00000453246	SH2B2	O14492	632 aa	Predicted RBP	11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	WWC2	Q6AWC2	1192 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	PXDNL	A1KZ92	1463 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	WDHD1	O75717	1129 aa	Predicted RBP	11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	NCBP1	Q09161	790 aa	Known RBP	11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	USPL1	Q5W0Q7	1092 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	TBC1D10C	Q8IV04	446 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	TXLNB	Q8N3L3	684 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	SAP30BP	Q9UHR5	308 aa	Known RBP	11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	ADGRL3	Q9HAR2	1447 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	RFC4	P35249	363 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	PICALM	Q13492	652 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	FAM114A1	Q8IWE2	563 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	SMYD4	Q8IYR2	804 aa	Predicted RBP	11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	PIGB	Q92521	554 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	SLF1	Q9BQI6	1058 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.12	□□□□□ -0.63	2e-6	■■■■■ 96.1
ABCA13-205	ENST00000453246	VPS18	Q9P253	973 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	RSPH14	Q9UHP6	348 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	FGFR1OP	O95684	399 aa	Known RBP	11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	CAPN2	P17655	700 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	HIBADH	P31937	336 aa	Known RBP	11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	CCDC122	Q5T0U0	273 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	WDR78	Q5VTH9	848 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	TCERG1L	Q5VWI1	586 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	CTR9	Q6PD62	1173 aa		11.12	□□□□□ -0.63
ABCA13-205	ENST00000453246	GOLGA6L10	A6NI86	522 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	ZBTB22	O15209	634 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	PAK1	Q13153	545 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	SARM1	Q6SZW1	724 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	TRMT1L	Q7Z2T5	733 aa	Known RBP	11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	LCORL	Q8N3X6	602 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	CCDC42	Q96M95	316 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	CARD10	Q9BWT7	1032 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	CSRNP2	Q9H175	543 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	PSD	A5PKW4	1024 aa	Predicted RBP	11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	AP5Z1	O43299	807 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	PPP6R2	O75170	966 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	LDHB	P07195	334 aa	Known RBP	11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	EXOSC10	Q01780	885 aa	Known RBP	11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	ARID5A	Q03989	594 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	TPTE2	Q6XPS3	522 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	CYB5R4	Q7L1T6	521 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	KRT86	O43790	486 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	RFX5	P48382	616 aa	Predicted RBP	11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	CHRND	Q07001	517 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	TBC1D8B	Q0IIM8	1120 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	ST3GAL1	Q11201	340 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	NEK11	Q8NG66	645 aa		11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	IPO4	Q8TEX9	1081 aa	Known RBP	11.11	□□□□□ -0.63
ABCA13-205	ENST00000453246	MACROD2	A1Z1Q3	448 aa		11.1	□□□□□ -0.63
ABCA13-205	ENST00000453246	ZSCAN20	P17040	1043 aa	Predicted RBP	11.1	□□□□□ -0.63
ABCA13-205	ENST00000453246	KIF5A	Q12840	1032 aa		11.1	□□□□□ -0.63
ABCA13-205	ENST00000453246	RASGRF1	Q13972	1273 aa		11.1	□□□□□ -0.63
ABCA13-205	ENST00000453246	ALS2CR12	Q96Q35	445 aa		11.1	□□□□□ -0.63
ABCA13-205	ENST00000453246	AGL	P35573	1532 aa		11.1	□□□□□ -0.63
ABCA13-205	ENST00000453246	IKBKB	O14920	756 aa		11.1	□□□□□ -0.63
ABCA13-205	ENST00000453246	MCM3	P25205	808 aa		11.1	□□□□□ -0.63
ABCA13-205	ENST00000453246	TNNI2	P48788	182 aa		11.1	□□□□□ -0.63
ABCA13-205	ENST00000453246	CDR1	P51861	262 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms