RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 PPP4R2Q9NY27 417 aa17.2■□□□□ 0.34
COL3A1-203ENST00000450867 AFG3L2Q9Y4W6 797 aa17.2■□□□□ 0.34
COL3A1-203ENST00000450867 ZMYM6O95789 1325 aa17.2■□□□□ 0.34
COL3A1-203ENST00000450867 CETPP11597 493 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 JAG1P78504 1218 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 ALX1Q15699 326 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 SLC4A8Q2Y0W8 1093 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 C16orf86Q6ZW13 317 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 IFNL1Q8IU54 200 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 BRI3BPQ8WY22 251 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 BEGAINQ9BUH8 593 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 ZCCHC17Q9NP64 241 aaKnown RBP17.19■□□□□ 0.34
COL3A1-203ENST00000450867 RNF186Q9NXI6 227 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 ZBTB21Q9ULJ3 1066 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 CCDC171Q6TFL3 1326 aa17.19■□□□□ 0.34
COL3A1-203ENST00000450867 IGF2BP3O00425 579 aaKnown RBP eCLIP17.18■□□□□ 0.34
COL3A1-203ENST00000450867 ALDH1A1P00352 501 aa17.18■□□□□ 0.34
COL3A1-203ENST00000450867 MOGSQ13724 837 aa17.18■□□□□ 0.34
COL3A1-203ENST00000450867 CCDC129Q6ZRS4 1044 aa17.18■□□□□ 0.34
COL3A1-203ENST00000450867 PTPN18Q99952 460 aa17.18■□□□□ 0.34
COL3A1-203ENST00000450867 WDR18Q9BV38 432 aa17.18■□□□□ 0.34
COL3A1-203ENST00000450867 NACAP1Q9BZK3 213 aa17.18■□□□□ 0.34
COL3A1-203ENST00000450867 ZHX2Q9Y6X8 837 aa17.18■□□□□ 0.34
COL3A1-203ENST00000450867 CASP8AP2Q9UKL3 1982 aa17.17■□□□□ 0.34
COL3A1-203ENST00000450867 CYP2D7A0A087X1C5 515 aa17.17■□□□□ 0.34
COL3A1-203ENST00000450867 CCL15-CCL14A0A0B4J2E2 113 aa17.17■□□□□ 0.34
COL3A1-203ENST00000450867 A0A0G2JLL6 359 aaPredicted RBP17.17■□□□□ 0.34
COL3A1-203ENST00000450867 USP17L5A8MUK1 530 aa17.17■□□□□ 0.34
COL3A1-203ENST00000450867 HSPA8P11142 646 aaKnown RBP17.17■□□□□ 0.34
COL3A1-203ENST00000450867 CTCFP49711 727 aaPredicted RBP17.17■□□□□ 0.34
COL3A1-203ENST00000450867 MFAP1P55081 439 aaKnown RBP17.17■□□□□ 0.34
COL3A1-203ENST00000450867 CCL15Q16663 113 aa17.17■□□□□ 0.34
COL3A1-203ENST00000450867 CERKLQ49MI3 558 aaPredicted RBP17.17■□□□□ 0.34
COL3A1-203ENST00000450867 NOM1Q5C9Z4 860 aaKnown RBP17.17■□□□□ 0.34
COL3A1-203ENST00000450867 PRRT2Q7Z6L0 340 aaPredicted RBP17.17■□□□□ 0.34
COL3A1-203ENST00000450867 ZNF589Q86UQ0 364 aaPredicted RBP17.17■□□□□ 0.34
COL3A1-203ENST00000450867 DIAPH3Q9NSV4 1193 aa17.17■□□□□ 0.34
COL3A1-203ENST00000450867 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.17■□□□□ 0.34
COL3A1-203ENST00000450867 SMIM22K7EJ46 135 aa17.16■□□□□ 0.34
COL3A1-203ENST00000450867 GDF11O95390 407 aa17.16■□□□□ 0.34
COL3A1-203ENST00000450867 TDO2P48775 406 aa17.16■□□□□ 0.34
COL3A1-203ENST00000450867 CDK8P49336 464 aa17.16■□□□□ 0.34
COL3A1-203ENST00000450867 BMP2KLQ5H9B9 411 aa17.16■□□□□ 0.34
COL3A1-203ENST00000450867 VPS53Q5VIR6 699 aa17.16■□□□□ 0.34
COL3A1-203ENST00000450867 ZNF280CQ8ND82 737 aa17.16■□□□□ 0.34
COL3A1-203ENST00000450867 DYNLL2Q96FJ2 89 aa17.16■□□□□ 0.34
COL3A1-203ENST00000450867 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.16■□□□□ 0.34
COL3A1-203ENST00000450867 RAD50Q92878 1312 aa17.16■□□□□ 0.34
COL3A1-203ENST00000450867 TRPA1O75762 1119 aa17.15■□□□□ 0.34
COL3A1-203ENST00000450867 HSPD1P10809 573 aaKnown RBP17.15■□□□□ 0.34
COL3A1-203ENST00000450867 CHMLP26374 656 aa17.15■□□□□ 0.34
COL3A1-203ENST00000450867 ABCB5Q2M3G0 1257 aa17.15■□□□□ 0.34
COL3A1-203ENST00000450867 SHROOM1Q2M3G4 852 aaPredicted RBP17.15■□□□□ 0.34
COL3A1-203ENST00000450867 SH3D19Q5HYK7 790 aa17.15■□□□□ 0.34
COL3A1-203ENST00000450867 OTUD7BQ6GQQ9 843 aa17.15■□□□□ 0.34
COL3A1-203ENST00000450867 SLC44A5Q8NCS7 719 aa17.15■□□□□ 0.34
COL3A1-203ENST00000450867 CCDC17Q96LX7 622 aa17.15■□□□□ 0.34
COL3A1-203ENST00000450867 NAPBQ9H115 298 aa17.15■□□□□ 0.34
COL3A1-203ENST00000450867 AS3MTQ9HBK9 375 aa17.15■□□□□ 0.34
COL3A1-203ENST00000450867 ANAPC4Q9UJX5 808 aa17.15■□□□□ 0.34
COL3A1-203ENST00000450867 MYH4Q9Y623 1939 aa17.14■□□□□ 0.33
COL3A1-203ENST00000450867 GH2P01242 217 aa17.14■□□□□ 0.33
COL3A1-203ENST00000450867 APPP05067 770 aa17.14■□□□□ 0.33
COL3A1-203ENST00000450867 GUCY1A2P33402 732 aa17.14■□□□□ 0.33
COL3A1-203ENST00000450867 CWC27Q6UX04 472 aaKnown RBP17.14■□□□□ 0.33
COL3A1-203ENST00000450867 ANKRD23Q86SG2 305 aa17.14■□□□□ 0.33
COL3A1-203ENST00000450867 CCDC84Q86UT8 332 aaPredicted RBP17.14■□□□□ 0.33
COL3A1-203ENST00000450867 PRDM10Q9NQV6 1147 aa17.14■□□□□ 0.33
COL3A1-203ENST00000450867 BTBD19C9JJ37 291 aa17.13■□□□□ 0.33
COL3A1-203ENST00000450867 TMEM179Q6ZVK1 233 aa17.13■□□□□ 0.33
COL3A1-203ENST00000450867 FASTKD5Q7L8L6 764 aaKnown RBP17.13■□□□□ 0.33
COL3A1-203ENST00000450867 SKAP1Q86WV1 359 aa17.13■□□□□ 0.33
COL3A1-203ENST00000450867 FAM43AQ8N2R8 423 aa17.13■□□□□ 0.33
COL3A1-203ENST00000450867 PROCA1Q8NCQ7 364 aaPredicted RBP17.13■□□□□ 0.33
COL3A1-203ENST00000450867 CABP5Q9NP86 173 aa17.13■□□□□ 0.33
COL3A1-203ENST00000450867 SLC45A1Q9Y2W3 748 aa17.13■□□□□ 0.33
COL3A1-203ENST00000450867 PARP14Q460N5 1801 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 MINDY4BA8MYZ0 360 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 FGAP02671 866 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 FGRP09769 529 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 RASA1P20936 1047 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 BACE1P56817 501 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 PPARAQ07869 468 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 SPP2Q13103 211 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 GPAT2Q6NUI2 795 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 DSCC1Q9BVC3 393 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 IL25Q9H293 177 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 ZNF287Q9HBT7 754 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 PLIN4Q96Q06 1357 aa17.12■□□□□ 0.33
COL3A1-203ENST00000450867 TRIM75PA6NK02 468 aa17.11■□□□□ 0.33
COL3A1-203ENST00000450867 C19orf81C9J6K1 198 aa17.11■□□□□ 0.33
COL3A1-203ENST00000450867 AKR1B1P15121 316 aa17.11■□□□□ 0.33
COL3A1-203ENST00000450867 RUFY2Q8WXA3 655 aa17.11■□□□□ 0.33
COL3A1-203ENST00000450867 C12orf42Q96LP6 360 aa17.11■□□□□ 0.33
COL3A1-203ENST00000450867 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.11■□□□□ 0.33
COL3A1-203ENST00000450867 RLFQ13129 1914 aa17.1■□□□□ 0.33
COL3A1-203ENST00000450867 USP17L10C9JJH3 530 aa17.1■□□□□ 0.33
COL3A1-203ENST00000450867 SGSM2O43147 1006 aa17.1■□□□□ 0.33
COL3A1-203ENST00000450867 LBX1P52954 281 aa17.1■□□□□ 0.33
COL3A1-203ENST00000450867 SEPT2Q15019 361 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms