RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 CCDC178Q5BJE1 867 aa12.31□□□□□ -0.44
VIPAS39-203ENST00000448935 CC2D2BQ6DHV5 1058 aa12.31□□□□□ -0.44
VIPAS39-203ENST00000448935 ZNF396Q96N95 335 aaPredicted RBP12.31□□□□□ -0.44
VIPAS39-203ENST00000448935 INCENPQ9NQS7 918 aa12.31□□□□□ -0.44
VIPAS39-203ENST00000448935 EMILIN3Q9NT22 766 aa12.31□□□□□ -0.44
VIPAS39-203ENST00000448935 MCM9Q9NXL9 1143 aa12.31□□□□□ -0.44
VIPAS39-203ENST00000448935 TACC3Q9Y6A5 838 aa12.31□□□□□ -0.44
VIPAS39-203ENST00000448935 SRCAPQ6ZRS2 3230 aa12.31□□□□□ -0.44
VIPAS39-203ENST00000448935 TNKSO95271 1327 aa12.31□□□□□ -0.44
VIPAS39-203ENST00000448935 GOLGA6L4A6NEF3 574 aa12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 RANBP6O60518 1105 aaKnown RBP12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 DTNBO60941 627 aa12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 FDPSP14324 419 aaKnown RBP12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 RTN1Q16799 776 aa12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 GRIPAP1Q4V328 841 aa12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 BRAPQ7Z569 592 aa12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 TRIM22Q8IYM9 498 aa12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 SPATA32Q96LK8 384 aa12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 ZSCAN10Q96SZ4 725 aaPredicted RBP12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 RTFDC1Q9BY42 306 aaPredicted RBP12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 ANO8Q9HCE9 1232 aaPredicted RBP12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 ROBO3Q96MS0 1386 aa12.3□□□□□ -0.44
VIPAS39-203ENST00000448935 RIMBP2O15034 1052 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 IFNAR1P17181 557 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 BTDP43251 543 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 SSRP1Q08945 709 aaKnown RBP12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 TRIM29Q14134 588 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 SEC23AQ15436 765 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 C12orf60Q5U649 245 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 PODNQ7Z5L7 613 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 CATIPQ7Z7H3 387 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 ZNF654Q8IZM8 581 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 FBXO18Q8NFZ0 1043 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 SH3RF3Q8TEJ3 882 aaPredicted RBP12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 SLC16A10Q8TF71 515 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 TMEM63CQ9P1W3 806 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 GAKO14976 1311 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 CDK5RAP2Q96SN8 1893 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 GADD45BO75293 160 aaPredicted RBP12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 ADD1P35611 737 aaKnown RBP12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 GTF2IP78347 998 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 DIXDC1Q155Q3 683 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 CCDC183Q5T5S1 534 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 IFIT1BQ5T764 474 aaKnown RBP12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 SLC51AQ86UW1 340 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 STK11IPQ8N1F8 1099 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 SUPT20HQ8NEM7 779 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 ZKSCAN3Q9BRR0 538 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 GRPEL1Q9HAV7 217 aa12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 RBM28Q9NW13 759 aaKnown RBP12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 MKRN1Q9UHC7 482 aaKnown RBP12.29□□□□□ -0.44
VIPAS39-203ENST00000448935 FOCADQ5VW36 1801 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 DDAH1O94760 285 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 FMNL1O95466 1100 aaPredicted RBP12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 CDC27P30260 824 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 FKBP1AP62942 108 aaKnown RBP12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 NTRK3Q16288 839 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 LRSAM1Q6UWE0 723 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 TTC6Q86TZ1 520 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 RAB11FIP4Q86YS3 637 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 TEX11Q8IYF3 940 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 FANCBQ8NB91 859 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 NKX2-3Q8TAU0 364 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 ALG1Q9BT22 464 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 SENP2Q9HC62 589 aa12.28□□□□□ -0.44
VIPAS39-203ENST00000448935 CYP2D7A0A087X1C5 515 aa12.27□□□□□ -0.44
VIPAS39-203ENST00000448935 TSPY2A6NKD2 308 aa12.27□□□□□ -0.44
VIPAS39-203ENST00000448935 GPR37O15354 613 aa12.27□□□□□ -0.44
VIPAS39-203ENST00000448935 POLR3DP05423 398 aaPredicted RBP12.27□□□□□ -0.44
VIPAS39-203ENST00000448935 CD44P16070 742 aaKnown RBP12.27□□□□□ -0.44
VIPAS39-203ENST00000448935 GRIK5Q16478 980 aa12.27□□□□□ -0.44
VIPAS39-203ENST00000448935 ENAHQ8N8S7 591 aaPredicted RBP12.27□□□□□ -0.44
VIPAS39-203ENST00000448935 TGFBRAP1Q8WUH2 860 aa12.27□□□□□ -0.44
VIPAS39-203ENST00000448935 LEO1Q8WVC0 666 aaPredicted RBP12.27□□□□□ -0.44
VIPAS39-203ENST00000448935 MKNK2Q9HBH9 465 aa12.27□□□□□ -0.44
VIPAS39-203ENST00000448935 ECM29Q5VYK3 1845 aa12.27□□□□□ -0.45
VIPAS39-203ENST00000448935 MYH1P12882 1939 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 DEXIO95424 95 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 USP17L8P0C7I0 530 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 RXRAP19793 462 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 AKAP17AQ02040 695 aaKnown RBP12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 FAM173BQ6P4H8 233 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 CCDC125Q86Z20 511 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 CCDC144CPQ8IYA2 1237 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 NUP133Q8WUM0 1156 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 FBXW7Q969H0 707 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 MYL10Q9BUA6 226 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 SLC26A6Q9BXS9 759 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 FAM217BQ9NTX9 383 aaPredicted RBP12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 RBM27Q9P2N5 1060 aaKnown RBP12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 TFIP11Q9UBB9 837 aaKnown RBP12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 RCOR1Q9UKL0 485 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 SLX4Q8IY92 1834 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 DDX60LQ5H9U9 1706 aaKnown RBP12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 MYH6P13533 1939 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 PRDM1O75626 825 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 XBP1P17861 261 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 FOSBP53539 338 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 GUCY1B3Q02153 619 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms