RNA–Protein interactions for RNA: ENST00000447995.2

PTPN12-208, Transcript of protein tyrosine phosphatase, non-receptor type 12, human

TSL 3

Gene PTPN12, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN12-208	ENST00000447995	NPHP4	O75161	1426 aa	Predicted RBP	4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	CHD2	O14647	1828 aa	Known RBP	4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995		J3QW42	95 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	MMP20	O60882	483 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	XYLB	O75191	536 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	GNAI2	P04899	355 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	PTMS	P20962	102 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	CD97	P48960	835 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	TAF7	Q15545	349 aa	Predicted RBP	4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	TRIP4	Q15650	581 aa	Predicted RBP	4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	CEP85	Q6P2H3	762 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	TREML1	Q86YW5	311 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	SIRT2	Q8IXJ6	389 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	TMEM130	Q8N3G9	435 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	NSUN5	Q96P11	429 aa	Known RBP	4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	C1orf115	Q9H7X2	142 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	PCMTD2	Q9NV79	361 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	CHMP5	Q9NZZ3	219 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	KCNMB2	Q9Y691	235 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	MSH6	P52701	1360 aa		4.98	□□□□□ -1.61
PTPN12-208	ENST00000447995	OVOS2	A0A0G2JMS6	1433 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	NCAPD2	Q15021	1401 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	ATP10D	Q9P241	1426 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	NFAT5	O94916	1531 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	PHRF1	Q9P1Y6	1649 aa	Known RBP	4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	ADAMTSL3	P82987	1691 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	NWD1	Q149M9	1564 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	SSTR4	P31391	388 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	FKBP5	Q13451	457 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	SETDB1	Q15047	1291 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	AMOT	Q4VCS5	1084 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	PLEKHO1	Q53GL0	409 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	TTC22	Q5TAA0	569 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	GDF6	Q6KF10	455 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	SLC4A10	Q6U841	1118 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	RGL4	Q8IZJ4	473 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	AGGF1	Q8N302	714 aa	eCLIP	4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	SLK	Q9H2G2	1235 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	ANTXR1	Q9H6X2	564 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	TRIM33	Q9UPN9	1127 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	HDAC5	Q9UQL6	1122 aa		4.97	□□□□□ -1.61
PTPN12-208	ENST00000447995	RGPD8	O14715	1765 aa	Predicted RBP	4.96	□□□□□ -1.61
PTPN12-208	ENST00000447995	LMTK3	Q96Q04	1460 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	CEMIP	Q8WUJ3	1361 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	PLEKHG2	Q9H7P9	1386 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	LOC102724428	A0A0B4J2F2	783 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	FRAT2	O75474	233 aa	Predicted RBP	4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	REC8	O95072	547 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	GHRH	P01286	108 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	PSAP	P07602	524 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	HSP90AB1	P08238	724 aa	Known RBP	4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	SIK1	P57059	783 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	RABEP1	Q15276	862 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	KRT24	Q2M2I5	525 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	AKAP4	Q5JQC9	854 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	C1orf141	Q5JVX7	400 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	NUTM2G	Q5VZR2	741 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	MAP4K3	Q8IVH8	894 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	IL22RA1	Q8N6P7	574 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	VTI1A	Q96AJ9	217 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	LTV1	Q96GA3	475 aa	Predicted RBP	4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	MEIS3	Q99687	375 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	SRCIN1	Q9C0H9	1055 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	VRTN	Q9H8Y1	702 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	MARF1	Q9Y4F3	1742 aa	Known RBP	4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	SLIT3	O75094	1523 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	MST1R	Q04912	1400 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	AOX1	Q06278	1338 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	KIF1A	Q12756	1690 aa		4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	FAM208A	Q9UK61	1670 aa	Known RBP	4.96	□□□□□ -1.62
PTPN12-208	ENST00000447995	SETD1B	Q9UPS6	1966 aa	Known RBP	4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	BTBD11	A6QL63	1104 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	WISP1	O95388	367 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	HSP90AA1	P07900	732 aa	Known RBP	4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	GLB1	P16278	677 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	LMOD1	P29536	600 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	ATP8B2	P98198	1209 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	TEF	Q10587	303 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	HSP90AB4P	Q58FF6	505 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	COX20	Q5RI15	118 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	L1TD1	Q5T7N2	865 aa	Known RBP	4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	ZNF530	Q6P9A1	599 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	SLC51A	Q86UW1	340 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	CMTR1	Q8N1G2	835 aa	Known RBP	4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	IL17RE	Q8NFR9	667 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	CALR3	Q96L12	384 aa	Known RBP	4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	GBP4	Q96PP9	640 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	BCL11A	Q9H165	835 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	MIS18A	Q9NYP9	233 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	NCOA3	Q9Y6Q9	1424 aa		4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	MED1	Q15648	1581 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN12-208	ENST00000447995	LTN1	O94822	1766 aa		4.94	□□□□□ -1.62
PTPN12-208	ENST00000447995	KRTAP4-8	A0A0G2JLE6	195 aa		4.94	□□□□□ -1.62
PTPN12-208	ENST00000447995	TM4SF5	O14894	197 aa		4.94	□□□□□ -1.62
PTPN12-208	ENST00000447995	ERC2	O15083	957 aa		4.94	□□□□□ -1.62
PTPN12-208	ENST00000447995	RAB11FIP3	O75154	756 aa		4.94	□□□□□ -1.62
PTPN12-208	ENST00000447995	MED26	O95402	600 aa		4.94	□□□□□ -1.62
PTPN12-208	ENST00000447995	TGFB1	P01137	390 aa		4.94	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms