RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 PNMA5Q96PV4 448 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 DHRS4Q9BTZ2 278 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 SARGQ9BW04 601 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 MAN1C1Q9NR34 630 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 KCNQ5Q9NR82 932 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 C9orf78Q9NZ63 289 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 TRAV20A0A0B4J274 112 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 A0A1W2PQH9 124 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 RNASEH2AO75792 299 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 NAT2P11245 290 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 SCNN1BP51168 640 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 TRIP4Q15650 581 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 ABCB5Q2M3G0 1257 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 LRRFIP1Q32MZ4 808 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 FAM209AQ5JX71 171 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 SKAP1Q86WV1 359 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 REXO1Q8N1G1 1221 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 OR2W6PQ8NHA6 318 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 ASAP3Q8TDY4 903 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 RHBDD1Q8TEB9 315 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 SUSD3Q96L08 255 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 GPR39O43194 453 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 SUSD5O60279 629 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 MT-CO1P00395 513 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 GUCY2CP25092 1073 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 MAPK9P45984 424 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 SLC10A6Q3KNW5 377 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 GNPTABQ3T906 1256 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 ADGRD1Q6QNK2 874 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 UBE2R2Q712K3 238 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 RSRC2Q7L4I2 434 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 SRLQ86TD4 932 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 FAM186BQ8IYM0 893 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 CACTIN-AS1Q8N1I8 211 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 PCDHB10Q9UN67 800 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 PCDHB5Q9Y5E4 795 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 DGKGP49619 791 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 IL2P60568 153 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 DDX10Q13206 875 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 CFAP100Q494V2 611 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 SYDE2Q5VT97 1194 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 JAKMIP3Q5VZ66 844 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 ZKSCAN2Q63HK3 967 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 MRM1Q6IN84 353 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 KRT25Q7Z3Z0 450 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 SUGP1Q8IWZ8 645 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 TRIM22Q8IYM9 498 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 SLC39A13Q96H72 371 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 EPN3Q9H201 632 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 IFT22Q9H7X7 185 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 NLRC4Q9NPP4 1024 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 INTS7Q9NVH2 962 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 BCS1LQ9Y276 419 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 APAF1O14727 1248 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 FBXO21O94952 628 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 IL33O95760 270 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 RPS26P62854 115 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 RBM10P98175 930 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 CLN3Q13286 438 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 HSP90AA2PQ14568 343 aaPredicted RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 CTC1Q2NKJ3 1217 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 PLA2G4EQ3MJ16 856 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 PKN3Q6P5Z2 889 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 LHFPL2Q6ZUX7 228 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 NLRP13Q86W25 1043 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 C19orf47Q8N9M1 422 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 STRBPQ96SI9 672 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 MYD88Q99836 296 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 ABCB6Q9NP58 842 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 NGRNQ9NPE2 291 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 FAM86C1Q9NVL1 165 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 MRFAP1Q9Y605 127 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 PMM2O15305 246 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 HIP1RO75146 1068 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 RFPL1O75677 317 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 JMJD7P0C870 316 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 SDSP20132 328 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 CCT5P48643 541 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 SARSP49591 514 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 MAP3K10Q02779 954 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 RASSF7Q02833 373 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 LRRC14Q15048 493 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 CLUL1Q15846 466 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 CCDC84Q86UT8 332 aaPredicted RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 ZNF280CQ8ND82 737 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 ENOX1Q8TC92 643 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 DDX1Q92499 740 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 CAMKK2Q96RR4 588 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 TM9SF2Q99805 663 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 LRRC3Q9BY71 257 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 RHOBTB2Q9BYZ6 727 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 POLG2Q9UHN1 485 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 ASAP1Q9ULH1 1129 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 ANKRD6Q9Y2G4 727 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 WASHC2AQ641Q2 1341 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 SOWAHBA6NEL2 793 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 PRRT4C9JH25 899 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 PHKG2P15735 406 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 RRM1P23921 792 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 NUCB1Q02818 461 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms