RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 LDHCP07864 332 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 BTDP43251 543 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 PRSS12P56730 875 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 TFCP2Q12800 502 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 G3BP1Q13283 466 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS50-204ENST00000438395 GADL1Q6ZQY3 521 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 ERICH6Q7L0X2 663 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 FASTKD5Q7L8L6 764 aaKnown RBP9.56□□□□□ -0.88
VPS50-204ENST00000438395 TRMT2AQ8IZ69 625 aaKnown RBP9.56□□□□□ -0.88
VPS50-204ENST00000438395 SCYL3Q8IZE3 742 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 SMCR8Q8TEV9 937 aaPredicted RBP9.56□□□□□ -0.88
VPS50-204ENST00000438395 XAGE2Q96GT9 111 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 ZNF112Q9UJU3 913 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 KCNH4Q9UQ05 1017 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 ZHX2Q9Y6X8 837 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 MROH7-TTC4A0A0A0MT08 1334 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 GAKO14976 1311 aa9.56□□□□□ -0.88
VPS50-204ENST00000438395 CXCL11O14625 94 aa9.55□□□□□ -0.88
VPS50-204ENST00000438395 EN2P19622 333 aaPredicted RBP9.55□□□□□ -0.88
VPS50-204ENST00000438395 PSMC4P43686 418 aa9.55□□□□□ -0.88
VPS50-204ENST00000438395 FCGRTP55899 365 aa9.55□□□□□ -0.88
VPS50-204ENST00000438395 TIMM10P62072 90 aa9.55□□□□□ -0.88
VPS50-204ENST00000438395 LAPTM4BQ86VI4 370 aa9.55□□□□□ -0.88
VPS50-204ENST00000438395 SH3TC2Q8TF17 1288 aa9.55□□□□□ -0.88
VPS50-204ENST00000438395 IDI2Q9BXS1 227 aa9.55□□□□□ -0.88
VPS50-204ENST00000438395 ARHGAP39Q9C0H5 1083 aa9.55□□□□□ -0.88
VPS50-204ENST00000438395 RAI14Q9P0K7 980 aa9.55□□□□□ -0.88
VPS50-204ENST00000438395 LRP2BPQ9P2M1 347 aa9.55□□□□□ -0.88
VPS50-204ENST00000438395 UQCRFS1P1P0C7P4 283 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 TRIM27P14373 513 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 UBXN2AP68543 259 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 MECOMQ03112 1051 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 MTX1Q13505 466 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 ATF7IPQ6VMQ6 1270 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 PACS2Q86VP3 889 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 FTSJ3Q8IY81 847 aaKnown RBP9.54□□□□□ -0.88
VPS50-204ENST00000438395 SPATA5Q8NB90 893 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 CLUAP1Q96AJ1 413 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 TRIM47Q96LD4 638 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 TRIM34Q9BYJ4 488 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 SRRDQ9UH36 339 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 LAMB1P07942 1786 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 MYPNQ86TC9 1320 aa9.54□□□□□ -0.88
VPS50-204ENST00000438395 SOWAHBA6NEL2 793 aa9.53□□□□□ -0.88
VPS50-204ENST00000438395 TRIM75PA6NK02 468 aa9.53□□□□□ -0.88
VPS50-204ENST00000438395 CTNND1O60716 968 aaKnown RBP9.53□□□□□ -0.88
VPS50-204ENST00000438395 MAP4K4O95819 1239 aaPredicted RBP9.53□□□□□ -0.88
VPS50-204ENST00000438395 PTPRAP18433 802 aa9.53□□□□□ -0.88
VPS50-204ENST00000438395 GRK4P32298 578 aa9.53□□□□□ -0.88
VPS50-204ENST00000438395 C17orf99Q6UX52 265 aa9.53□□□□□ -0.88
VPS50-204ENST00000438395 ZFPM1Q8IX07 1006 aa9.53□□□□□ -0.88
VPS50-204ENST00000438395 NKX2-3Q8TAU0 364 aa9.53□□□□□ -0.88
VPS50-204ENST00000438395 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS50-204ENST00000438395 PNMA3Q9UL41 463 aa9.53□□□□□ -0.88
VPS50-204ENST00000438395 MYH13Q9UKX3 1938 aa9.52□□□□□ -0.88
VPS50-204ENST00000438395 A0A0G2JLL6 359 aaPredicted RBP9.52□□□□□ -0.89
VPS50-204ENST00000438395 BAG3O95817 575 aa9.52□□□□□ -0.89
VPS50-204ENST00000438395 CYP2C8P10632 490 aa9.52□□□□□ -0.89
VPS50-204ENST00000438395 CAP1Q01518 475 aa9.52□□□□□ -0.89
VPS50-204ENST00000438395 PABPC4Q13310 644 aaKnown RBP eCLIP9.52□□□□□ -0.89
VPS50-204ENST00000438395 CCDC158Q5M9N0 1113 aa9.52□□□□□ -0.89
VPS50-204ENST00000438395 TTC39AQ5SRH9 613 aa9.52□□□□□ -0.89
VPS50-204ENST00000438395 ZKSCAN2Q63HK3 967 aa9.52□□□□□ -0.89
VPS50-204ENST00000438395 PRRT2Q7Z6L0 340 aaPredicted RBP9.52□□□□□ -0.89
VPS50-204ENST00000438395 TEX11Q8IYF3 940 aa9.52□□□□□ -0.89
VPS50-204ENST00000438395 NPDC1Q9NQX5 325 aaPredicted RBP9.52□□□□□ -0.89
VPS50-204ENST00000438395 HMG20BQ9P0W2 317 aa9.52□□□□□ -0.89
VPS50-204ENST00000438395 RFX7Q2KHR2 1363 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 ATRNL1Q5VV63 1379 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 GPR75-ASB3A0A0A6YYF3 556 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 DDTLA6NHG4 134 aaPredicted RBP9.51□□□□□ -0.89
VPS50-204ENST00000438395 PHF20L1A8MW92 1017 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 TNPO2O14787 897 aaKnown RBP9.51□□□□□ -0.89
VPS50-204ENST00000438395 PRKCZQ05513 592 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 NAA16Q6N069 864 aaPredicted RBP9.51□□□□□ -0.89
VPS50-204ENST00000438395 PI16Q6UXB8 463 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 TBC1D9Q6ZT07 1266 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 COA7Q96BR5 231 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 RNF208Q9H0X6 261 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 DDX4Q9NQI0 724 aaKnown RBP9.51□□□□□ -0.89
VPS50-204ENST00000438395 SLC45A1Q9Y2W3 748 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 ADGRA2Q96PE1 1338 aa9.51□□□□□ -0.89
VPS50-204ENST00000438395 AK9Q5TCS8 1911 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 CENPFP49454 3210 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 PNMA6EA0A0J9YXQ4 647 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 FAM196BA6NMK8 535 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 BCAR3O75815 825 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 BCRP11274 1271 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 CCL5P13501 91 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 ARID4AP29374 1257 aaPredicted RBP9.5□□□□□ -0.89
VPS50-204ENST00000438395 RHBDL3P58872 404 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 HNRNPUQ00839 825 aaKnown RBP eCLIP9.5□□□□□ -0.89
VPS50-204ENST00000438395 MOGSQ13724 837 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 HABP4Q5JVS0 413 aaKnown RBP9.5□□□□□ -0.89
VPS50-204ENST00000438395 GPAT2Q6NUI2 795 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 PADI6Q6TGC4 694 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 SH3BP5LQ7L8J4 393 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 ITPRIPQ8IWB1 547 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 CRACR2BQ8N4Y2 399 aaPredicted RBP9.5□□□□□ -0.89
VPS50-204ENST00000438395 TATDN2Q93075 761 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms