RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 TRPC5Q9UL62 973 aaPredicted RBP16.41■□□□□ 0.22
LIG1-202ENST00000427526 MINPP1Q9UNW1 487 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 PRKAB2O43741 272 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 MYO1BO43795 1136 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 CNNM3Q8NE01 707 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 LRRC4BQ9NT99 713 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 TAOK2Q9UL54 1235 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 PNPLA7Q6ZV29 1317 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 SLU7O95391 586 aaKnown RBP16.4■□□□□ 0.22
LIG1-202ENST00000427526 TUBB4AP04350 444 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 CCDC93Q567U6 631 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 FAM196AQ6ZSG2 479 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 CBFA2T2O43439 604 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 NLRP3Q96P20 1036 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 GNAT2P19087 354 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 KMT5BQ4FZB7 885 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 LCORLQ8N3X6 602 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 MTA3Q9BTC8 594 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 NYXQ9GZU5 481 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 FOXP1Q9H334 677 aaPredicted RBP16.4■□□□□ 0.22
LIG1-202ENST00000427526 QTRT2Q9H974 415 aaKnown RBP16.4■□□□□ 0.22
LIG1-202ENST00000427526 FANCLQ9NW38 375 aa16.4■□□□□ 0.22
LIG1-202ENST00000427526 FBXO2Q9UK22 296 aaPredicted RBP16.4■□□□□ 0.22
LIG1-202ENST00000427526 TAF1P21675 1872 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 FOXN1O15353 648 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 SERPINC1P01008 464 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 PTPREP23469 700 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 PDE4BQ07343 736 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 OLFM4Q6UX06 510 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 VSTM4Q8IW00 320 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 DIS3L2Q8IYB7 885 aaKnown RBP16.39■□□□□ 0.21
LIG1-202ENST00000427526 GTPBP4Q9BZE4 634 aaKnown RBP16.39■□□□□ 0.21
LIG1-202ENST00000427526 RGL2O15211 777 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 NRDCO43847 1150 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 RFC4P35249 363 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 TRAPPC3LQ5T215 181 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 NT5DC1Q5TFE4 455 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 TPTE2Q6XPS3 522 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 SYT10Q6XYQ8 523 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 ZNF397Q8NF99 534 aaPredicted RBP16.39■□□□□ 0.21
LIG1-202ENST00000427526 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.39■□□□□ 0.21
LIG1-202ENST00000427526 KCNJ14Q9UNX9 436 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 MORC2Q9Y6X9 1032 aaPredicted RBP16.39■□□□□ 0.21
LIG1-202ENST00000427526 V9GYY5 206 aaPredicted RBP16.39■□□□□ 0.21
LIG1-202ENST00000427526 NHSQ6T4R5 1651 aa16.39■□□□□ 0.21
LIG1-202ENST00000427526 GRIN1Q05586 938 aa16.38■□□□□ 0.21
LIG1-202ENST00000427526 RTN1Q16799 776 aa16.38■□□□□ 0.21
LIG1-202ENST00000427526 SPECC1Q5M775 1068 aa16.38■□□□□ 0.21
LIG1-202ENST00000427526 CRACR2BQ8N4Y2 399 aaPredicted RBP16.38■□□□□ 0.21
LIG1-202ENST00000427526 SARSP49591 514 aaKnown RBP16.38■□□□□ 0.21
LIG1-202ENST00000427526 RPS8P62241 208 aaKnown RBP16.38■□□□□ 0.21
LIG1-202ENST00000427526 CFAP100Q494V2 611 aa16.38■□□□□ 0.21
LIG1-202ENST00000427526 RILPL1Q5EBL4 403 aa16.38■□□□□ 0.21
LIG1-202ENST00000427526 ZKSCAN3Q9BRR0 538 aa16.38■□□□□ 0.21
LIG1-202ENST00000427526 NACAP1Q9BZK3 213 aa16.38■□□□□ 0.21
LIG1-202ENST00000427526 INTS13Q9NVM9 706 aa16.38■□□□□ 0.21
LIG1-202ENST00000427526 LRP2BPQ9P2M1 347 aa16.38■□□□□ 0.21
LIG1-202ENST00000427526 SLC4A4Q9Y6R1 1079 aa16.38■□□□□ 0.21
LIG1-202ENST00000427526 WTAPQ15007 396 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 SAFBQ15424 915 aaKnown RBP eCLIP16.37■□□□□ 0.21
LIG1-202ENST00000427526 TRIM22Q8IYM9 498 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 LAMB2P55268 1798 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 TMEM232C9JQI7 657 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 KLRK1P26718 216 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 RCAN1P53805 252 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 UBE4AQ14139 1066 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 ELF2Q15723 593 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 TMTC2Q8N394 836 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 ZNF579Q8NAF0 562 aaKnown RBP16.37■□□□□ 0.21
LIG1-202ENST00000427526 DEXIO95424 95 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 TDO2P48775 406 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 SART3Q15020 963 aaKnown RBP16.37■□□□□ 0.21
LIG1-202ENST00000427526 ABCF2Q9UG63 623 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 MAN1B1Q9UKM7 699 aa16.37■□□□□ 0.21
LIG1-202ENST00000427526 EP400Q96L91 3159 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 NPHP1O15259 732 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 ETF1P62495 437 aaKnown RBP16.36■□□□□ 0.21
LIG1-202ENST00000427526 POSTNQ15063 836 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 RRP12Q5JTH9 1297 aaKnown RBP16.36■□□□□ 0.21
LIG1-202ENST00000427526 FBXO38Q6PIJ6 1188 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 TRIM65Q6PJ69 517 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 MIGA1Q8NAN2 632 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 FANCBQ8NB91 859 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 PCDHB6Q9Y5E3 794 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 SCN7AQ01118 1682 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 CCP110O43303 1012 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 TMEM139Q8IV31 216 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 FAM84BQ96KN1 310 aaPredicted RBP16.36■□□□□ 0.21
LIG1-202ENST00000427526 FAM53CQ9NYF3 392 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 HOOK1Q9UJC3 728 aaKnown RBP16.36■□□□□ 0.21
LIG1-202ENST00000427526 ZNF804BA4D1E1 1349 aa16.36■□□□□ 0.21
LIG1-202ENST00000427526 CCDC196A0A1B0GTZ2 297 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 TM4SF1P30408 202 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 TBX2Q13207 712 aaPredicted RBP16.35■□□□□ 0.21
LIG1-202ENST00000427526 NR5A1Q13285 461 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 SLC51AQ86UW1 340 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 CMTR1Q8N1G2 835 aaKnown RBP16.35■□□□□ 0.21
LIG1-202ENST00000427526 SRPRBQ9Y5M8 271 aaKnown RBP16.35■□□□□ 0.21
LIG1-202ENST00000427526 POLR2DO15514 142 aaKnown RBP16.35■□□□□ 0.21
LIG1-202ENST00000427526 TOP1P11387 765 aaKnown RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms