RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 DIXDC1Q155Q3 683 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 ZSCAN23Q3MJ62 389 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 CCDC93Q567U6 631 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 CCDC183Q5T5S1 534 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 STRIP1Q5VSL9 837 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 DGKHQ86XP1 1220 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 CTCFLQ8NI51 663 aaPredicted RBP10.98□□□□□ -0.65
HMGB4-201ENST00000425537 GPT2Q8TD30 523 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 TGFBRAP1Q8WUH2 860 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 C7orf43Q8WVR3 580 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 TEKT1Q969V4 418 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 MAP3K14Q99558 947 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 ALG1Q9BT22 464 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 TCP11L1Q9NUJ3 509 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 MKRN1Q9UHC7 482 aaKnown RBP10.98□□□□□ -0.65
HMGB4-201ENST00000425537 COL4A5P29400 1685 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 TCHHQ07283 1943 aa10.97□□□□□ -0.65
HMGB4-201ENST00000425537 MYH15Q9Y2K3 1946 aa10.97□□□□□ -0.65
HMGB4-201ENST00000425537 FDPSP14324 419 aaKnown RBP10.97□□□□□ -0.65
HMGB4-201ENST00000425537 ADD1P35611 737 aaKnown RBP10.97□□□□□ -0.65
HMGB4-201ENST00000425537 ENAHQ8N8S7 591 aaPredicted RBP10.97□□□□□ -0.65
HMGB4-201ENST00000425537 ZKSCAN3Q9BRR0 538 aa10.97□□□□□ -0.65
HMGB4-201ENST00000425537 RNF26Q9BY78 433 aaPredicted RBP10.97□□□□□ -0.65
HMGB4-201ENST00000425537 KAT14Q9H8E8 782 aa10.97□□□□□ -0.65
HMGB4-201ENST00000425537 RNF181Q9P0P0 153 aa10.97□□□□□ -0.65
HMGB4-201ENST00000425537 TTF2Q9UNY4 1162 aaKnown RBP10.97□□□□□ -0.65
HMGB4-201ENST00000425537 SBF1O95248 1867 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 MYO3BQ8WXR4 1341 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 CYP2D7A0A087X1C5 515 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 USP17L3A6NCW0 530 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 USP17L4A6NCW7 530 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 GRIN3BO60391 1043 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 USP17L8P0C7I0 530 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 TSPY3P0CV98 308 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 TSPY8P0CW00 308 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 KIAA2012Q0VF49 1180 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 DOK7Q18PE1 504 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 C9orf131Q5VYM1 1079 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 USP17L1Q7RTZ2 530 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 MAPKAPK5Q8IW41 473 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 FAM177A1Q8N128 213 aaPredicted RBP10.96□□□□□ -0.65
HMGB4-201ENST00000425537 STK11IPQ8N1F8 1099 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 JMYQ8N9B5 988 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 ZNF526Q8TF50 670 aaPredicted RBP10.96□□□□□ -0.65
HMGB4-201ENST00000425537 NUP133Q8WUM0 1156 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 LEO1Q8WVC0 666 aaPredicted RBP10.96□□□□□ -0.65
HMGB4-201ENST00000425537 ANKS1AQ92625 1134 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 SLC26A6Q9BXS9 759 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 GDPD2Q9HCC8 539 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 INCENPQ9NQS7 918 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 DAGLAQ9Y4D2 1042 aa10.96□□□□□ -0.65
HMGB4-201ENST00000425537 FOCADQ5VW36 1801 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 SNED1Q8TER0 1413 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 FLT1P17948 1338 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 ECE2O60344 883 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 YEATS4O95619 227 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 HLA-DOAP06340 250 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 CDC27P30260 824 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 RHBDL3P58872 404 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 TFAP4Q01664 338 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 NTRK3Q16288 839 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 AOC3Q16853 763 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 LRSAM1Q6UWE0 723 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 C16orf86Q6ZW13 317 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 CRACR2BQ8N4Y2 399 aaPredicted RBP10.95□□□□□ -0.66
HMGB4-201ENST00000425537 KCNG4Q8TDN1 519 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 PSMD1Q99460 953 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 LZTS2Q9BRK4 669 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 TAOK3Q9H2K8 898 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 GRPEL1Q9HAV7 217 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 BRMS1Q9HCU9 246 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 DDX19AQ9NUU7 478 aaKnown RBP10.95□□□□□ -0.66
HMGB4-201ENST00000425537 SWAP70Q9UH65 585 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 RCOR1Q9UKL0 485 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 TACC3Q9Y6A5 838 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 MYH1P12882 1939 aa10.95□□□□□ -0.66
HMGB4-201ENST00000425537 CDK5RAP2Q96SN8 1893 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 PRPF3O43395 683 aaKnown RBP10.94□□□□□ -0.66
HMGB4-201ENST00000425537 GADD45BO75293 160 aaPredicted RBP10.94□□□□□ -0.66
HMGB4-201ENST00000425537 PRDM1O75626 825 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 CYP2D6P10635 497 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 FOSBP53539 338 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 SF3A1Q15459 793 aaKnown RBP10.94□□□□□ -0.66
HMGB4-201ENST00000425537 GRIK5Q16478 980 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 KRT40Q6A162 431 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 RAB11FIP4Q86YS3 637 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 CCDC144CPQ8IYA2 1237 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 BICD2Q8TD16 824 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 ZDHHC15Q96MV8 337 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 MYL10Q9BUA6 226 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 DHX36Q9H2U1 1008 aaKnown RBP10.94□□□□□ -0.66
HMGB4-201ENST00000425537 FAM217BQ9NTX9 383 aaPredicted RBP10.94□□□□□ -0.66
HMGB4-201ENST00000425537 USP40Q9NVE5 1235 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 POLR3EQ9NVU0 708 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 RTEL1Q9NZ71 1219 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 TMEM63CQ9P1W3 806 aa10.94□□□□□ -0.66
HMGB4-201ENST00000425537 TFIP11Q9UBB9 837 aaKnown RBP10.94□□□□□ -0.66
HMGB4-201ENST00000425537 DDX60LQ5H9U9 1706 aaKnown RBP10.93□□□□□ -0.66
HMGB4-201ENST00000425537 PPIP5K2O43314 1243 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 RXRAP19793 462 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms