RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PCDHAC2Q9Y5I4 1007 aa17.26■□□□□ 0.35
USP4-203ENST00000415188 F8W031 263 aaPredicted RBP17.25■□□□□ 0.35
USP4-203ENST00000415188 CA12O43570 354 aa17.25■□□□□ 0.35
USP4-203ENST00000415188 KDM4AO75164 1064 aa17.25■□□□□ 0.35
USP4-203ENST00000415188 OFD1O75665 1012 aa17.25■□□□□ 0.35
USP4-203ENST00000415188 CAVIN2O95810 425 aa17.25■□□□□ 0.35
USP4-203ENST00000415188 PTMAP06454 111 aaKnown RBP17.25■□□□□ 0.35
USP4-203ENST00000415188 SLC5A1P13866 664 aa17.25■□□□□ 0.35
USP4-203ENST00000415188 RALYLQ86SE5 291 aaKnown RBP17.25■□□□□ 0.35
USP4-203ENST00000415188 DDX11Q96FC9 970 aa17.25■□□□□ 0.35
USP4-203ENST00000415188 PAPPA2Q9BXP8 1791 aa17.25■□□□□ 0.35
USP4-203ENST00000415188 UBE2Q2LH0YL09 131 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 ZNF213O14771 459 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 PRC1O43663 620 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 LIG1P18858 919 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 GYG1P46976 350 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 MMP14P50281 582 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 TERF1P54274 439 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 ALX1Q15699 326 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 FAM173BQ6P4H8 233 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 RASAL3Q86YV0 1011 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 PUS7LQ9H0K6 701 aaKnown RBP17.24■□□□□ 0.35
USP4-203ENST00000415188 TNMDQ9H2S6 317 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 RCOR1Q9UKL0 485 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 TPM3P06753 285 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 FKBP1BP68106 108 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 UBE4AQ14139 1066 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 CCDC102BQ68D86 513 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 FAM200AQ8TCP9 573 aa17.24■□□□□ 0.35
USP4-203ENST00000415188 NAP1L5Q96NT1 182 aaPredicted RBP17.24■□□□□ 0.35
USP4-203ENST00000415188 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.24■□□□□ 0.35
USP4-203ENST00000415188 TFIP11Q9UBB9 837 aaKnown RBP17.24■□□□□ 0.35
USP4-203ENST00000415188 MYO5AQ9Y4I1 1855 aaKnown RBP17.23■□□□□ 0.35
USP4-203ENST00000415188 CTAGE5O15320 804 aa17.23■□□□□ 0.35
USP4-203ENST00000415188 DTNBO60941 627 aa17.23■□□□□ 0.35
USP4-203ENST00000415188 TRDNQ13061 729 aa17.23■□□□□ 0.35
USP4-203ENST00000415188 TTLL12Q14166 644 aaPredicted RBP17.23■□□□□ 0.35
USP4-203ENST00000415188 DLGAP5Q15398 846 aa17.23■□□□□ 0.35
USP4-203ENST00000415188 BICD2Q8TD16 824 aa17.23■□□□□ 0.35
USP4-203ENST00000415188 FAM84BQ96KN1 310 aaPredicted RBP17.23■□□□□ 0.35
USP4-203ENST00000415188 DACT1Q9NYF0 836 aa17.23■□□□□ 0.35
USP4-203ENST00000415188 ADCY5O95622 1261 aa17.22■□□□□ 0.35
USP4-203ENST00000415188 PDE6AP16499 860 aa17.22■□□□□ 0.35
USP4-203ENST00000415188 HIBADHP31937 336 aaKnown RBP17.22■□□□□ 0.35
USP4-203ENST00000415188 ADD1P35611 737 aaKnown RBP17.22■□□□□ 0.35
USP4-203ENST00000415188 CCT2P78371 535 aaKnown RBP17.22■□□□□ 0.35
USP4-203ENST00000415188 TYRO3Q06418 890 aa17.22■□□□□ 0.35
USP4-203ENST00000415188 CFAP100Q494V2 611 aa17.22■□□□□ 0.35
USP4-203ENST00000415188 SLC9C2Q5TAH2 1124 aa17.22■□□□□ 0.35
USP4-203ENST00000415188 APOBEC3FQ8IUX4 373 aaKnown RBP17.22■□□□□ 0.35
USP4-203ENST00000415188 TDRD7Q8NHU6 1098 aaKnown RBP17.22■□□□□ 0.35
USP4-203ENST00000415188 ABHD8Q96I13 439 aa17.22■□□□□ 0.35
USP4-203ENST00000415188 PGBD1Q96JS3 809 aa17.22■□□□□ 0.35
USP4-203ENST00000415188 CSRNP1Q96S65 589 aa17.22■□□□□ 0.35
USP4-203ENST00000415188 PIH1D3Q9NQM4 214 aaKnown RBP17.22■□□□□ 0.35
USP4-203ENST00000415188 USP25Q9UHP3 1055 aa17.22■□□□□ 0.35
USP4-203ENST00000415188 TPM2P07951 284 aa17.21■□□□□ 0.35
USP4-203ENST00000415188 PHKA1P46020 1223 aa17.21■□□□□ 0.35
USP4-203ENST00000415188 FKBP1AP62942 108 aaKnown RBP17.21■□□□□ 0.35
USP4-203ENST00000415188 PRKG1Q13976 671 aa17.21■□□□□ 0.35
USP4-203ENST00000415188 MTMR14Q8NCE2 650 aa17.21■□□□□ 0.35
USP4-203ENST00000415188 FAM205AQ6ZU69 1335 aa17.21■□□□□ 0.35
USP4-203ENST00000415188 TCRBV5S4A2TA0A5A2 114 aa17.2■□□□□ 0.34
USP4-203ENST00000415188 CLRN2A0PK11 232 aa17.2■□□□□ 0.34
USP4-203ENST00000415188 NF2P35240 595 aa17.2■□□□□ 0.34
USP4-203ENST00000415188 HAND2P61296 217 aa17.2■□□□□ 0.34
USP4-203ENST00000415188 MAP3K12Q12852 859 aa17.2■□□□□ 0.34
USP4-203ENST00000415188 PI16Q6UXB8 463 aa17.2■□□□□ 0.34
USP4-203ENST00000415188 BRAPQ7Z569 592 aa17.2■□□□□ 0.34
USP4-203ENST00000415188 PRMT6Q96LA8 375 aaPredicted RBP17.2■□□□□ 0.34
USP4-203ENST00000415188 RNF186Q9NXI6 227 aa17.2■□□□□ 0.34
USP4-203ENST00000415188 NAP1L2Q9ULW6 460 aaPredicted RBP17.2■□□□□ 0.34
USP4-203ENST00000415188 FZD1Q9UP38 647 aa17.2■□□□□ 0.34
USP4-203ENST00000415188 CASP8AP2Q9UKL3 1982 aa17.2■□□□□ 0.34
USP4-203ENST00000415188 KLF18A0A0U1RQI7 1052 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 SPDYE2BA6NHP3 402 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 GOLGA8BA8MQT2 603 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 TRPA1O75762 1119 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 CDKL5O76039 1030 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 SPDYE6P0CI01 402 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 ANTXR2P58335 489 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 MFSD14BQ5SR56 506 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 TMEM87BQ96K49 555 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 DEFB129Q9H1M3 183 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 NCOA5Q9HCD5 579 aaKnown RBP17.19■□□□□ 0.34
USP4-203ENST00000415188 ZNF532Q9HCE3 1301 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 IQSEC3Q9UPP2 1182 aaPredicted RBP17.19■□□□□ 0.34
USP4-203ENST00000415188 MRVI1Q9Y6F6 885 aa17.19■□□□□ 0.34
USP4-203ENST00000415188 IDH1O75874 414 aaKnown RBP17.18■□□□□ 0.34
USP4-203ENST00000415188 RBM5P52756 815 aaKnown RBP eCLIP17.18■□□□□ 0.34
USP4-203ENST00000415188 TPRNQ4KMQ1 711 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 SASS6Q6UVJ0 657 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 FBXO33Q7Z6M2 555 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 SPATA5Q8NB90 893 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 ANGEL1Q9UNK9 670 aaKnown RBP17.18■□□□□ 0.34
USP4-203ENST00000415188 HPS5Q9UPZ3 1129 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 GOLGA6L6A8MZA4 724 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 CPLX1O14810 134 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 FDPSP14324 419 aaKnown RBP17.18■□□□□ 0.34
USP4-203ENST00000415188 GNAT2P19087 354 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms