RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 SOX9P48436 509 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 CDK8P49336 464 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 LIAT1Q6ZQX7 453 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 SPOCK3Q9BQ16 436 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 LRRC4BQ9NT99 713 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 NOB1Q9ULX3 412 aaKnown RBP3.35□□□□□ -1.87
MCF2-204ENST00000414978 ITSN1Q15811 1721 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 COL6A1P12109 1028 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 ARSDP51689 593 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 C1QTNF8P60827 252 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 MCL1Q07820 350 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 TMEM95Q3KNT9 176 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 HSP90AB2PQ58FF8 381 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 NBPF6Q5VWK0 638 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 CNNM4Q6P4Q7 775 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 PCGF5Q86SE9 256 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 NKD1Q969G9 470 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 MTMR8Q96EF0 704 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 NBPF4Q96M43 638 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 OSMRQ99650 979 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 ZKSCAN3Q9BRR0 538 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 MTA3Q9BTC8 594 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 LACRTQ9GZZ8 138 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 CHRDQ9H2X0 955 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 BRMS1Q9HCU9 246 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 SUPT16HQ9Y5B9 1047 aaKnown RBP3.35□□□□□ -1.87
MCF2-204ENST00000414978 HRH3Q9Y5N1 445 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 TOPAZ1Q8N9V7 1692 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 PIK3C2AO00443 1686 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 A0A087X0B3 334 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 A0A0U1RQG5 324 aaPredicted RBP3.35□□□□□ -1.87
MCF2-204ENST00000414978 MMP20O60882 483 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 RARAP10276 462 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 STRN3Q13033 797 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 TXNDC11Q6PKC3 985 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 POTEGQ6S5H5 508 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 PPARGC1BQ86YN6 1023 aaKnown RBP3.35□□□□□ -1.87
MCF2-204ENST00000414978 C3orf58Q8NDZ4 430 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 FHDC1Q9C0D6 1143 aaPredicted RBP3.35□□□□□ -1.87
MCF2-204ENST00000414978 KLHL3Q9UH77 587 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 LMO7Q8WWI1 1683 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 TUBGCP6Q96RT7 1819 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 A0A1W2PP55 124 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 WASLO00401 505 aaPredicted RBP3.34□□□□□ -1.87
MCF2-204ENST00000414978 BCL9O00512 1426 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 GJB6O95452 261 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 NFKB1P19838 968 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 LIG3P49916 1009 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 TEAD4Q15561 434 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 BRDTQ58F21 947 aaPredicted RBP3.34□□□□□ -1.87
MCF2-204ENST00000414978 GRIN3AQ8TCU5 1115 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 BHMTQ93088 406 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 SCYL1Q96KG9 808 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 CEP89Q96ST8 783 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 CCDC8Q9H0W5 538 aaPredicted RBP3.34□□□□□ -1.87
MCF2-204ENST00000414978 PPP4R2Q9NY27 417 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 NHSQ6T4R5 1651 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 IFRD1O00458 451 aaPredicted RBP3.34□□□□□ -1.87
MCF2-204ENST00000414978 GRNP28799 593 aaKnown RBP3.34□□□□□ -1.87
MCF2-204ENST00000414978 EIF6P56537 245 aaKnown RBP3.34□□□□□ -1.87
MCF2-204ENST00000414978 SOGA3Q5TF21 947 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 PCNX4Q63HM2 1172 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 GGT6Q6P531 493 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 RNF180Q86T96 592 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 SLC7A3Q8WY07 619 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 XAGE2Q96GT9 111 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 DNAJC25Q9H1X3 360 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 LIN7BQ9HAP6 207 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 ACTR10Q9NZ32 417 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 MAP4K5Q9Y4K4 846 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 CSADQ9Y600 493 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 CLTCL1P53675 1640 aa3.34□□□□□ -1.87
MCF2-204ENST00000414978 AATKQ6ZMQ8 1374 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 SOBPA7XYQ1 873 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 PDPK1O15530 556 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 BPNT1O95861 308 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 TFE3P19532 575 aaPredicted RBP3.34□□□□□ -1.88
MCF2-204ENST00000414978 INPP5BP32019 993 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 PTGIRP43119 386 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 C1orf53Q5VUE5 145 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 YOD1Q5VVQ6 348 aaPredicted RBP3.34□□□□□ -1.88
MCF2-204ENST00000414978 ERAP2Q6P179 960 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 CCAR1Q8IX12 1150 aaKnown RBP3.34□□□□□ -1.88
MCF2-204ENST00000414978 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.34□□□□□ -1.88
MCF2-204ENST00000414978 KIFC2Q96AC6 838 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 CCDC136Q96JN2 1154 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 PTCH2Q9Y6C5 1203 aa3.34□□□□□ -1.88
MCF2-204ENST00000414978 HFM1A2PYH4 1435 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 TECPR2O15040 1411 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 FZD9O00144 591 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 WNT7BP56706 349 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 EXOSC10Q01780 885 aaKnown RBP3.33□□□□□ -1.88
MCF2-204ENST00000414978 NR5A1Q13285 461 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 DDR2Q16832 855 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 CTC1Q2NKJ3 1217 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 LONRF3Q496Y0 759 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 RASIP1Q5U651 963 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 PHC3Q8NDX5 983 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 ATL2Q8NHH9 583 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 LEO1Q8WVC0 666 aaPredicted RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms