RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 PRELPP51888 382 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 FOSBP53539 338 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 RCAN1P53805 252 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 FOXD4L6Q3SYB3 417 aaPredicted RBP16.43■□□□□ 0.22
GPNMB-203ENST00000409458 FOXD4L3Q6VB84 417 aaPredicted RBP16.43■□□□□ 0.22
GPNMB-203ENST00000409458 ZFPM1Q8IX07 1006 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 IDI2Q9BXS1 227 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 FAM198AQ9UFP1 575 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 TSPY3P0CV98 308 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 TSPY8P0CW00 308 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 GABPAQ06546 454 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 NTRK3Q16288 839 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 RTN1Q16799 776 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 ILDR2Q71H61 639 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 TTC6Q86TZ1 520 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 ZNF444Q8N0Y2 327 aaPredicted RBP16.43■□□□□ 0.22
GPNMB-203ENST00000409458 NUP133Q8WUM0 1156 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 JDP2Q8WYK2 163 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 PRMT6Q96LA8 375 aaPredicted RBP16.43■□□□□ 0.22
GPNMB-203ENST00000409458 TDRD3Q9H7E2 651 aaKnown RBP16.43■□□□□ 0.22
GPNMB-203ENST00000409458 ZNF287Q9HBT7 754 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 IL17RBQ9NRM6 502 aa16.43■□□□□ 0.22
GPNMB-203ENST00000409458 CDKL5O76039 1030 aa16.42■□□□□ 0.22
GPNMB-203ENST00000409458 PDIA4P13667 645 aaKnown RBP16.42■□□□□ 0.22
GPNMB-203ENST00000409458 CIAPIN1Q6FI81 312 aa16.42■□□□□ 0.22
GPNMB-203ENST00000409458 RCSD1Q6JBY9 416 aa16.42■□□□□ 0.22
GPNMB-203ENST00000409458 AGBL3Q8NEM8 1001 aa16.42■□□□□ 0.22
GPNMB-203ENST00000409458 FHDC1Q9C0D6 1143 aaPredicted RBP16.42■□□□□ 0.22
GPNMB-203ENST00000409458 ORC3Q9UBD5 711 aaPredicted RBP16.42■□□□□ 0.22
GPNMB-203ENST00000409458 HDAC9Q9UKV0 1011 aa16.42■□□□□ 0.22
GPNMB-203ENST00000409458 KIF3AQ9Y496 699 aa16.42■□□□□ 0.22
GPNMB-203ENST00000409458 SPDYE2BA6NHP3 402 aa16.41■□□□□ 0.22
GPNMB-203ENST00000409458 SPDYE6P0CI01 402 aa16.41■□□□□ 0.22
GPNMB-203ENST00000409458 TCP10Q12799 353 aa16.41■□□□□ 0.22
GPNMB-203ENST00000409458 CATIPQ7Z7H3 387 aa16.41■□□□□ 0.22
GPNMB-203ENST00000409458 PHKBQ93100 1093 aa16.41■□□□□ 0.22
GPNMB-203ENST00000409458 TCP11L1Q9NUJ3 509 aa16.41■□□□□ 0.22
GPNMB-203ENST00000409458 TCHHQ07283 1943 aa16.41■□□□□ 0.22
GPNMB-203ENST00000409458 GOLGA6L22H0YM25 854 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 H3BQV1 296 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 DDAH1O94760 285 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 HLA-DOAP06340 250 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 IFFO2Q5TF58 517 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 CPLX2Q6PUV4 134 aaKnown RBP16.4■□□□□ 0.22
GPNMB-203ENST00000409458 FERMT3Q86UX7 667 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 FANCBQ8NB91 859 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 SERPINB13Q9UIV8 391 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 MYH15Q9Y2K3 1946 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 PLIN4Q96Q06 1357 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 NPM3O75607 178 aaKnown RBP16.4■□□□□ 0.22
GPNMB-203ENST00000409458 TROAPQ12815 778 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 SH3BP5LQ7L8J4 393 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 DGKHQ86XP1 1220 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 OGFOD1Q8N543 542 aa16.4■□□□□ 0.22
GPNMB-203ENST00000409458 GREB1LQ9C091 1923 aaPredicted RBP16.39■□□□□ 0.21
GPNMB-203ENST00000409458 COL2A1P02458 1487 aaPredicted RBP16.39■□□□□ 0.21
GPNMB-203ENST00000409458 DDTLA6NHG4 134 aaPredicted RBP16.39■□□□□ 0.21
GPNMB-203ENST00000409458 SLURP2P0DP57 97 aa16.39■□□□□ 0.21
GPNMB-203ENST00000409458 IFNAR1P17181 557 aa16.39■□□□□ 0.21
GPNMB-203ENST00000409458 DLGAP5Q15398 846 aa16.39■□□□□ 0.21
GPNMB-203ENST00000409458 NEDD1Q8NHV4 660 aa16.39■□□□□ 0.21
GPNMB-203ENST00000409458 ANKS1AQ92625 1134 aa16.39■□□□□ 0.21
GPNMB-203ENST00000409458 EHD4Q9H223 541 aa16.39■□□□□ 0.21
GPNMB-203ENST00000409458 SWAP70Q9UH65 585 aa16.39■□□□□ 0.21
GPNMB-203ENST00000409458 STK36Q9NRP7 1315 aa16.39■□□□□ 0.21
GPNMB-203ENST00000409458 SHTN1A0MZ66 631 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 UBE2Q2LH0YL09 131 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 FMNL1O95466 1100 aaPredicted RBP16.38■□□□□ 0.21
GPNMB-203ENST00000409458 CALM1P0DP23 149 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 CALM2P0DP24 149 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 CALM3P0DP25 149 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 SHMT1P34896 483 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 GUCY1B3Q02153 619 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 RESTQ13127 1097 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 TNIP1Q15025 636 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 CCDC178Q5BJE1 867 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 NBPF11Q86T75 865 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 CMTR1Q8N1G2 835 aaKnown RBP16.38■□□□□ 0.21
GPNMB-203ENST00000409458 AIFM3Q96NN9 605 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 SLC26A6Q9BXS9 759 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 DHX36Q9H2U1 1008 aaKnown RBP16.38■□□□□ 0.21
GPNMB-203ENST00000409458 DNAJC18Q9H819 358 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 KAT14Q9H8E8 782 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 LMBRD1Q9NUN5 540 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 ATP6V1DQ9Y5K8 247 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 ATRNL1Q5VV63 1379 aa16.38■□□□□ 0.21
GPNMB-203ENST00000409458 CCDC196A0A1B0GTZ2 297 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 CLRN2A0PK11 232 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 ENTPD3O75355 529 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 AKR1B1P15121 316 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 PTMSP20962 102 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 MTMR14Q8NCE2 650 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 C8orf76Q96K31 380 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.37■□□□□ 0.21
GPNMB-203ENST00000409458 CNPY2Q9Y2B0 182 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 MYH6P13533 1939 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 DICER1Q9UPY3 1922 aaKnown RBP16.37■□□□□ 0.21
GPNMB-203ENST00000409458 FZD9O00144 591 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 TRAK2O60296 914 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 PLEKHA8P1O95397 391 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms