RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 PRMT6Q96LA8 375 aaPredicted RBP24.63■■□□□ 1.53
TPM1-208ENST00000404484 UBAC1Q9BSL1 405 aa24.63■■□□□ 1.53
TPM1-208ENST00000404484 NAP1L2Q9ULW6 460 aaPredicted RBP24.63■■□□□ 1.53
TPM1-208ENST00000404484 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.63■■□□□ 1.53
TPM1-208ENST00000404484 TACC3Q9Y6A5 838 aa24.63■■□□□ 1.53
TPM1-208ENST00000404484 KLF18A0A0U1RQI7 1052 aa24.63■■□□□ 1.53
TPM1-208ENST00000404484 DHX16O60231 1041 aaKnown RBP24.63■■□□□ 1.53
TPM1-208ENST00000404484 SGMS1Q86VZ5 419 aa24.63■■□□□ 1.53
TPM1-208ENST00000404484 IGDCC4Q8TDY8 1250 aa24.63■■□□□ 1.53
TPM1-208ENST00000404484 KLRG1Q96E93 195 aa24.63■■□□□ 1.53
TPM1-208ENST00000404484 INCENPQ9NQS7 918 aa24.63■■□□□ 1.53
TPM1-208ENST00000404484 PITPNM2Q9BZ72 1349 aa24.62■■□□□ 1.53
TPM1-208ENST00000404484 DDX60LQ5H9U9 1706 aaKnown RBP24.62■■□□□ 1.53
TPM1-208ENST00000404484 SPDYE2BA6NHP3 402 aa24.62■■□□□ 1.53
TPM1-208ENST00000404484 SPDYE6P0CI01 402 aa24.62■■□□□ 1.53
TPM1-208ENST00000404484 RBM5P52756 815 aaKnown RBP eCLIP24.62■■□□□ 1.53
TPM1-208ENST00000404484 IQCA1Q86XH1 822 aa24.62■■□□□ 1.53
TPM1-208ENST00000404484 ZNF408Q9H9D4 720 aa24.62■■□□□ 1.53
TPM1-208ENST00000404484 USP40Q9NVE5 1235 aa24.62■■□□□ 1.53
TPM1-208ENST00000404484 GOLGA8BA8MQT2 603 aa24.61■■□□□ 1.53
TPM1-208ENST00000404484 CYP2D6P10635 497 aa24.61■■□□□ 1.53
TPM1-208ENST00000404484 PDCP20941 246 aa24.61■■□□□ 1.53
TPM1-208ENST00000404484 GJB2P29033 226 aa24.61■■□□□ 1.53
TPM1-208ENST00000404484 SCRN1Q12765 414 aa24.61■■□□□ 1.53
TPM1-208ENST00000404484 APOBEC3HQ6NTF7 200 aaKnown RBP24.61■■□□□ 1.53
TPM1-208ENST00000404484 STK11IPQ8N1F8 1099 aa24.61■■□□□ 1.53
TPM1-208ENST00000404484 GBP4Q96PP9 640 aa24.61■■□□□ 1.53
TPM1-208ENST00000404484 LY9Q9HBG7 655 aa24.61■■□□□ 1.53
TPM1-208ENST00000404484 KIF3AQ9Y496 699 aa24.61■■□□□ 1.53
TPM1-208ENST00000404484 RANBP6O60518 1105 aaKnown RBP24.6■■□□□ 1.53
TPM1-208ENST00000404484 WTAPQ15007 396 aa24.6■■□□□ 1.53
TPM1-208ENST00000404484 NFKBIBQ15653 356 aa24.6■■□□□ 1.53
TPM1-208ENST00000404484 NFXL1Q6ZNB6 911 aa24.6■■□□□ 1.53
TPM1-208ENST00000404484 TNPO1Q92973 898 aaKnown RBP24.6■■□□□ 1.53
TPM1-208ENST00000404484 GPHNQ9NQX3 736 aaPredicted RBP24.6■■□□□ 1.53
TPM1-208ENST00000404484 WDR33Q9C0J8 1336 aaKnown RBP24.6■■□□□ 1.53
TPM1-208ENST00000404484 CCDC69A6NI79 296 aa24.59■■□□□ 1.53
TPM1-208ENST00000404484 HMGN5P82970 282 aaKnown RBP24.59■■□□□ 1.53
TPM1-208ENST00000404484 CDC42EP5Q6NZY7 148 aa24.59■■□□□ 1.53
TPM1-208ENST00000404484 SYNE3Q6ZMZ3 975 aa24.59■■□□□ 1.53
TPM1-208ENST00000404484 ABT1Q9ULW3 272 aaKnown RBP24.59■■□□□ 1.53
TPM1-208ENST00000404484 SAP30BPQ9UHR5 308 aaKnown RBP24.59■■□□□ 1.53
TPM1-208ENST00000404484 BRPF3Q9ULD4 1205 aa24.59■■□□□ 1.53
TPM1-208ENST00000404484 MYH1P12882 1939 aa24.58■■□□□ 1.53
TPM1-208ENST00000404484 TRPM7Q96QT4 1865 aa24.58■■□□□ 1.53
TPM1-208ENST00000404484 WDHD1O75717 1129 aaPredicted RBP24.58■■□□□ 1.52
TPM1-208ENST00000404484 BRD1O95696 1058 aa24.58■■□□□ 1.52
TPM1-208ENST00000404484 RCAN1P53805 252 aa24.58■■□□□ 1.52
TPM1-208ENST00000404484 PRAMEF18Q5VWM3 479 aa24.58■■□□□ 1.52
TPM1-208ENST00000404484 TTC6Q86TZ1 520 aa24.58■■□□□ 1.52
TPM1-208ENST00000404484 NKX2-3Q8TAU0 364 aa24.58■■□□□ 1.52
TPM1-208ENST00000404484 CDCA5Q96FF9 252 aa24.58■■□□□ 1.52
TPM1-208ENST00000404484 MKNK2Q9HBH9 465 aa24.58■■□□□ 1.52
TPM1-208ENST00000404484 CLRN2A0PK11 232 aa24.57■■□□□ 1.52
TPM1-208ENST00000404484 ZBTB43O43298 467 aa24.57■■□□□ 1.52
TPM1-208ENST00000404484 CCT2P78371 535 aaKnown RBP24.57■■□□□ 1.52
TPM1-208ENST00000404484 CCDC178Q5BJE1 867 aa24.57■■□□□ 1.52
TPM1-208ENST00000404484 APOA5Q6Q788 366 aa24.57■■□□□ 1.52
TPM1-208ENST00000404484 ZSCAN10Q96SZ4 725 aaPredicted RBP24.57■■□□□ 1.52
TPM1-208ENST00000404484 SLC12A7Q9Y666 1083 aa24.57■■□□□ 1.52
TPM1-208ENST00000404484 ECM29Q5VYK3 1845 aa24.57■■□□□ 1.52
TPM1-208ENST00000404484 MYO1BO43795 1136 aa24.56■■□□□ 1.52
TPM1-208ENST00000404484 NPM3O75607 178 aaKnown RBP24.56■■□□□ 1.52
TPM1-208ENST00000404484 PRDM1O75626 825 aa24.56■■□□□ 1.52
TPM1-208ENST00000404484 DEFB115Q30KQ5 88 aa24.56■■□□□ 1.52
TPM1-208ENST00000404484 CPLX2Q6PUV4 134 aaKnown RBP24.56■■□□□ 1.52
TPM1-208ENST00000404484 SMARCC2Q8TAQ2 1214 aa24.56■■□□□ 1.52
TPM1-208ENST00000404484 TLL2Q9Y6L7 1015 aa24.56■■□□□ 1.52
TPM1-208ENST00000404484 CNTNAP1P78357 1384 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 TNKSO95271 1327 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 RASSF10A6NK89 507 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 SMIM22K7EJ46 135 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 STX6O43752 255 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 METAP2P50579 478 aaKnown RBP eCLIP24.55■■□□□ 1.52
TPM1-208ENST00000404484 PICALMQ13492 652 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 CLEC17AQ6ZS10 378 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 C16orf86Q6ZW13 317 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 SAPCD2Q86UD0 394 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 APOBEC3FQ8IUX4 373 aaKnown RBP24.55■■□□□ 1.52
TPM1-208ENST00000404484 NSUN7Q8NE18 718 aaKnown RBP24.55■■□□□ 1.52
TPM1-208ENST00000404484 TDRD3Q9H7E2 651 aaKnown RBP24.55■■□□□ 1.52
TPM1-208ENST00000404484 TAOK2Q9UL54 1235 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 HPS5Q9UPZ3 1129 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 NID2Q14112 1375 aa24.55■■□□□ 1.52
TPM1-208ENST00000404484 TSPY2A6NKD2 308 aa24.54■■□□□ 1.52
TPM1-208ENST00000404484 CPLX1O14810 134 aa24.54■■□□□ 1.52
TPM1-208ENST00000404484 SYT1P21579 422 aa24.54■■□□□ 1.52
TPM1-208ENST00000404484 PLCD1P51178 756 aa24.54■■□□□ 1.52
TPM1-208ENST00000404484 PKP1Q13835 747 aa24.54■■□□□ 1.52
TPM1-208ENST00000404484 FAM184AQ8NB25 1140 aa24.54■■□□□ 1.52
TPM1-208ENST00000404484 IDI2Q9BXS1 227 aa24.54■■□□□ 1.52
TPM1-208ENST00000404484 OSBPL5Q9H0X9 879 aaPredicted RBP24.54■■□□□ 1.52
TPM1-208ENST00000404484 CDKL5O76039 1030 aa24.54■■□□□ 1.52
TPM1-208ENST00000404484 SEC23AQ15436 765 aa24.54■■□□□ 1.52
TPM1-208ENST00000404484 ZNF444Q8N0Y2 327 aaPredicted RBP24.54■■□□□ 1.52
TPM1-208ENST00000404484 ZKSCAN3Q9BRR0 538 aa24.54■■□□□ 1.52
TPM1-208ENST00000404484 ZNF70Q9UC06 446 aaPredicted RBP24.54■■□□□ 1.52
TPM1-208ENST00000404484 PTPDC1A2A3K4 754 aa24.53■■□□□ 1.52
TPM1-208ENST00000404484 HLA-DOAP06340 250 aa24.53■■□□□ 1.52
TPM1-208ENST00000404484 EVX2Q03828 476 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms