RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 CLIC6Q96NY7 704 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 PCDHA7Q9UN72 937 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 MRVI1Q9Y6F6 885 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 GTF2A1P52655 376 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-204ENST00000397545 CUL4AQ13619 759 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 KRT79Q5XKE5 535 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 LRRC8AQ8IWT6 810 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 RGS22Q8NE09 1264 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 BLZF1Q9H2G9 400 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 SERTAD1Q9UHV2 236 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 MEGF6O75095 1541 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 CUTAO60888 179 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 CYP2E1P05181 493 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-204ENST00000397545 POTEJP0CG39 1038 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 VAV2P52735 878 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 SF3A3Q12874 501 aaKnown RBP eCLIP12.11□□□□□ -0.474e-9■■■■■ 57
CCDC40-204ENST00000397545 ADALQ6DHV7 355 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 NBPF11Q86T75 865 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 NEK11Q8NG66 645 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 TMEM87BQ96K49 555 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 VPS54Q9P1Q0 977 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 GCOM1H8Y6P7 765 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-204ENST00000397545 DEXIO95424 95 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 CHGBP05060 677 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 MYZAPP0CAP1 466 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 NDUFA8P51970 172 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 GOLGA8FQ08AF8 430 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 GOLGA8DPQ0D2H9 430 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 TNIP1Q15025 636 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 POSTNQ15063 836 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 ZNF589Q86UQ0 364 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-204ENST00000397545 CCDC24Q8N4L8 307 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 MLKLQ8NB16 471 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 NAPGQ99747 312 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-204ENST00000397545 FANCLQ9NW38 375 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 KDM6AO15550 1401 aaPredicted RBP12.1□□□□□ -0.47
CCDC40-204ENST00000397545 GNAT2P19087 354 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 KCNQ4P56696 695 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 CEP57Q86XR8 500 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 OTUD6BQ8N6M0 293 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 TAOK3Q9H2K8 898 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 OPA1O60313 960 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 CTNNA2P26232 953 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 OAS2P29728 719 aaKnown RBP12.1□□□□□ -0.47
CCDC40-204ENST00000397545 NOC4LQ9BVI4 516 aaKnown RBP12.1□□□□□ -0.47
CCDC40-204ENST00000397545 IMPACTQ9P2X3 320 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 ZNF532Q9HCE3 1301 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 VGLL3A8MV65 326 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 TRAF5O00463 557 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 HSPD1P10809 573 aaKnown RBP12.1□□□□□ -0.47
CCDC40-204ENST00000397545 KRT13P13646 458 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 BRINP3Q76B58 766 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 DNAJC10Q8IXB1 793 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 MAP4K1Q92918 833 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 PAIP2Q9BPZ3 127 aaKnown RBP12.1□□□□□ -0.47
CCDC40-204ENST00000397545 C6orf50Q9HD87 102 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 LRRC37A3O60309 1634 aa12.1□□□□□ -0.47
CCDC40-204ENST00000397545 TMEM110-MUSTN1A8MSY1 372 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 ETF1P62495 437 aaKnown RBP12.09□□□□□ -0.47
CCDC40-204ENST00000397545 PDE4DQ08499 809 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 SCRN1Q12765 414 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 ZRSR2Q15696 482 aaKnown RBP12.09□□□□□ -0.47
CCDC40-204ENST00000397545 LRRC24Q50LG9 513 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 CFAP58Q5T655 872 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 CSGALNACT2Q8N6G5 542 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 SETDB2Q96T68 719 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 SPATA31A3Q5VYP0 1347 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 SYNRGQ9UMZ2 1314 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 MARF1Q9Y4F3 1742 aaKnown RBP12.09□□□□□ -0.47
CCDC40-204ENST00000397545 CYP21A2P08686 494 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 EZRP15311 586 aaKnown RBP12.09□□□□□ -0.47
CCDC40-204ENST00000397545 SLF2Q8IX21 1173 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 DBNLQ9UJU6 430 aaKnown RBP12.09□□□□□ -0.47
CCDC40-204ENST00000397545 CLIC4Q9Y696 253 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 BTBD18B2RXH4 712 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 CALM1P0DP23 149 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 CALM2P0DP24 149 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 CALM3P0DP25 149 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 HPDP32754 393 aaPredicted RBP12.09□□□□□ -0.47
CCDC40-204ENST00000397545 KIAA1524Q8TCG1 905 aa12.09□□□□□ -0.47
CCDC40-204ENST00000397545 FGAP02671 866 aa12.08□□□□□ -0.47
CCDC40-204ENST00000397545 RFC4P35249 363 aa12.08□□□□□ -0.47
CCDC40-204ENST00000397545 GABPB1Q06547 395 aaPredicted RBP12.08□□□□□ -0.47
CCDC40-204ENST00000397545 SPECC1LQ69YQ0 1117 aa12.08□□□□□ -0.47
CCDC40-204ENST00000397545 HOOK3Q86VS8 718 aa12.08□□□□□ -0.47
CCDC40-204ENST00000397545 FAM76AQ8TAV0 307 aa12.08□□□□□ -0.47
CCDC40-204ENST00000397545 RTL9Q8NET4 1388 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 EIF6P56537 245 aaKnown RBP12.08□□□□□ -0.48
CCDC40-204ENST00000397545 RAPGEF1Q13905 1077 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 PLS1Q14651 629 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 TTC38Q5R3I4 469 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 C11orf57Q6ZUT1 292 aaPredicted RBP12.08□□□□□ -0.48
CCDC40-204ENST00000397545 RASSF4Q9H2L5 321 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 SAP30BPQ9UHR5 308 aaKnown RBP12.08□□□□□ -0.48
CCDC40-204ENST00000397545 MST1RQ04912 1400 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 COBLO75128 1261 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 CALRP27797 417 aaKnown RBP12.08□□□□□ -0.48
CCDC40-204ENST00000397545 GJC1P36383 396 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 SLFNL1Q499Z3 407 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 SELENOOQ9BVL4 669 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms