RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 RCAN1P53805 252 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 CUL4AQ13619 759 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 METTL16Q86W50 562 aaKnown RBP16.05■□□□□ 0.16
VAPB-202ENST00000395802 DGKHQ86XP1 1220 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 PPP2R3BQ9Y5P8 575 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 SLC12A7Q9Y666 1083 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 TNKSO95271 1327 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 SHTN1A0MZ66 631 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 DDTLA6NHG4 134 aaPredicted RBP16.05■□□□□ 0.16
VAPB-202ENST00000395802 EPS15P42566 896 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 PPP2R5BQ15173 497 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 IFIT1BQ5T764 474 aaKnown RBP16.05■□□□□ 0.16
VAPB-202ENST00000395802 SPRYD3Q8NCJ5 442 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 HACL1Q9UJ83 578 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 TACC3Q9Y6A5 838 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 PITPNM2Q9BZ72 1349 aa16.05■□□□□ 0.16
VAPB-202ENST00000395802 TBC1D12O60347 775 aa16.04■□□□□ 0.16
VAPB-202ENST00000395802 RASA1P20936 1047 aa16.04■□□□□ 0.16
VAPB-202ENST00000395802 DDIT3P35638 169 aa16.04■□□□□ 0.16
VAPB-202ENST00000395802 ME3Q16798 604 aa16.04■□□□□ 0.16
VAPB-202ENST00000395802 USP50Q70EL3 339 aaPredicted RBP16.04■□□□□ 0.16
VAPB-202ENST00000395802 ZFPM1Q8IX07 1006 aa16.04■□□□□ 0.16
VAPB-202ENST00000395802 NEDD1Q8NHV4 660 aa16.04■□□□□ 0.16
VAPB-202ENST00000395802 LY9Q9HBG7 655 aa16.04■□□□□ 0.16
VAPB-202ENST00000395802 NAP1L2Q9ULW6 460 aaPredicted RBP16.04■□□□□ 0.16
VAPB-202ENST00000395802 KLF18A0A0U1RQI7 1052 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 CALM1P0DP23 149 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 CALM2P0DP24 149 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 CALM3P0DP25 149 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 PDIA4P13667 645 aaKnown RBP16.03■□□□□ 0.16
VAPB-202ENST00000395802 APOBRQ0VD83 1088 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 RASA3Q14644 834 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 FAM47AQ5JRC9 791 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 CNTNAP1P78357 1384 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 CCDC196A0A1B0GTZ2 297 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 SMIM22K7EJ46 135 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 PFKFB2O60825 505 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 EGFRP00533 1210 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 COL9A3Q14050 684 aaPredicted RBP16.03■□□□□ 0.16
VAPB-202ENST00000395802 CERKLQ49MI3 558 aaPredicted RBP16.03■□□□□ 0.16
VAPB-202ENST00000395802 TATDN1Q6P1N9 297 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 CPLX2Q6PUV4 134 aaKnown RBP16.03■□□□□ 0.16
VAPB-202ENST00000395802 SH3BP5LQ7L8J4 393 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 CATIPQ7Z7H3 387 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 PNMA8AQ86V59 439 aaPredicted RBP16.03■□□□□ 0.16
VAPB-202ENST00000395802 SLC44A5Q8NCS7 719 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 ZC3H15Q8WU90 426 aaKnown RBP16.03■□□□□ 0.16
VAPB-202ENST00000395802 GTF3C6Q969F1 213 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 ZKSCAN3Q9BRR0 538 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 DEFB129Q9H1M3 183 aa16.03■□□□□ 0.16
VAPB-202ENST00000395802 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.03■□□□□ 0.16
VAPB-202ENST00000395802 PLIN4Q96Q06 1357 aa16.02■□□□□ 0.16
VAPB-202ENST00000395802 ZBTB43O43298 467 aa16.02■□□□□ 0.16
VAPB-202ENST00000395802 PDIA3P30101 505 aaKnown RBP16.02■□□□□ 0.16
VAPB-202ENST00000395802 EVX2Q03828 476 aa16.02■□□□□ 0.16
VAPB-202ENST00000395802 ANGEL2Q5VTE6 544 aaKnown RBP16.02■□□□□ 0.16
VAPB-202ENST00000395802 ENAHQ8N8S7 591 aaPredicted RBP16.02■□□□□ 0.16
VAPB-202ENST00000395802 ANKS1AQ92625 1134 aa16.02■□□□□ 0.16
VAPB-202ENST00000395802 LLPHQ9BRT6 129 aaKnown RBP16.02■□□□□ 0.16
VAPB-202ENST00000395802 TMEM39BQ9GZU3 492 aa16.02■□□□□ 0.16
VAPB-202ENST00000395802 GOLGA8BA8MQT2 603 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 SHMT1P34896 483 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 SEC23AQ15436 765 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 TRPM4Q8TD43 1214 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 DCPSQ96C86 337 aaKnown RBP16.01■□□□□ 0.15
VAPB-202ENST00000395802 LARP6Q9BRS8 491 aaKnown RBP16.01■□□□□ 0.15
VAPB-202ENST00000395802 KAT14Q9H8E8 782 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 CABP5Q9NP86 173 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 KIF3AQ9Y496 699 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 CPLX1O14810 134 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 CDKL5O76039 1030 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 EPHX2P34913 555 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 METAP2P50579 478 aaKnown RBP eCLIP16.01■□□□□ 0.15
VAPB-202ENST00000395802 DCAF15Q66K64 600 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 APOA5Q6Q788 366 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 GGA3Q9NZ52 723 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 STX8Q9UNK0 236 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 SMC3Q9UQE7 1217 aa16.01■□□□□ 0.15
VAPB-202ENST00000395802 MPHOSPH10O00566 681 aaKnown RBP16■□□□□ 0.15
VAPB-202ENST00000395802 DDAH1O94760 285 aa16■□□□□ 0.15
VAPB-202ENST00000395802 STK3Q13188 491 aa16■□□□□ 0.15
VAPB-202ENST00000395802 SUPT20HL1Q3ZLR7 823 aa16■□□□□ 0.15
VAPB-202ENST00000395802 TMEM179Q6ZVK1 233 aa16■□□□□ 0.15
VAPB-202ENST00000395802 CCDC83Q8IWF9 413 aa16■□□□□ 0.15
VAPB-202ENST00000395802 CIZ1Q9ULV3 898 aaPredicted RBP16■□□□□ 0.15
VAPB-202ENST00000395802 MAP3K10Q02779 954 aa15.99■□□□□ 0.15
VAPB-202ENST00000395802 SULF1Q8IWU6 871 aa15.99■□□□□ 0.15
VAPB-202ENST00000395802 KANSL2Q9H9L4 492 aa15.99■□□□□ 0.15
VAPB-202ENST00000395802 GINM1Q9NU53 330 aa15.99■□□□□ 0.15
VAPB-202ENST00000395802 BRPF3Q9ULD4 1205 aa15.99■□□□□ 0.15
VAPB-202ENST00000395802 SCN4AP35499 1836 aa15.99■□□□□ 0.15
VAPB-202ENST00000395802 MYH8P13535 1937 aa15.99■□□□□ 0.15
VAPB-202ENST00000395802 TTLL1O95922 423 aa15.98■□□□□ 0.15
VAPB-202ENST00000395802 HIRAP54198 1017 aaPredicted RBP15.98■□□□□ 0.15
VAPB-202ENST00000395802 HMGN5P82970 282 aaKnown RBP15.98■□□□□ 0.15
VAPB-202ENST00000395802 SCRN1Q12765 414 aa15.98■□□□□ 0.15
VAPB-202ENST00000395802 ABCB5Q2M3G0 1257 aa15.98■□□□□ 0.15
VAPB-202ENST00000395802 MICU3Q86XE3 530 aa15.98■□□□□ 0.15
VAPB-202ENST00000395802 ZNF654Q8IZM8 581 aa15.98■□□□□ 0.15
VAPB-202ENST00000395802 MAP3K14Q99558 947 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms