RNA–Protein interactions for RNA: ENST00000393120.6

MKS1-203, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 1,926 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-203ENST00000393120 TOB1P50616 345 aaPredicted RBP16.49■□□□□ 0.23
MKS1-203ENST00000393120 ST5P78524 1137 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 AKAP17AQ02040 695 aaKnown RBP16.49■□□□□ 0.23
MKS1-203ENST00000393120 SHC4Q6S5L8 630 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 CERS3Q8IU89 383 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 NAP1L5Q96NT1 182 aaPredicted RBP16.49■□□□□ 0.23
MKS1-203ENST00000393120 TRIM5Q9C035 493 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 TTC12Q9H892 705 aaPredicted RBP16.49■□□□□ 0.23
MKS1-203ENST00000393120 MYH13Q9UKX3 1938 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 BBOX1O75936 387 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 SERPINB2P05120 415 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 ATP2B4P23634 1241 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 SYKP43405 635 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 PKN1Q16512 942 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 DHX40Q8IX18 779 aaKnown RBP16.49■□□□□ 0.23
MKS1-203ENST00000393120 RBM17Q96I25 401 aaKnown RBP16.49■□□□□ 0.23
MKS1-203ENST00000393120 KCNJ14Q9UNX9 436 aa16.49■□□□□ 0.23
MKS1-203ENST00000393120 KIAA1551Q9HCM1 1747 aa16.48■□□□□ 0.23
MKS1-203ENST00000393120 MROH7-TTC4A0A0A0MT08 1334 aa16.48■□□□□ 0.23
MKS1-203ENST00000393120 KLRG2A4D1S0 409 aaPredicted RBP16.48■□□□□ 0.23
MKS1-203ENST00000393120 PRDM1O75626 825 aa16.48■□□□□ 0.23
MKS1-203ENST00000393120 LDHCP07864 332 aa16.48■□□□□ 0.23
MKS1-203ENST00000393120 KRI1Q8N9T8 703 aaKnown RBP16.48■□□□□ 0.23
MKS1-203ENST00000393120 MRFAP1L1Q96HT8 127 aa16.48■□□□□ 0.23
MKS1-203ENST00000393120 ZNF830Q96NB3 372 aaPredicted RBP16.48■□□□□ 0.23
MKS1-203ENST00000393120 QTRT2Q9H974 415 aaKnown RBP16.48■□□□□ 0.23
MKS1-203ENST00000393120 BECN2A8MW95 431 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 BAG3O95817 575 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 GPSM2P81274 684 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 C12orf60Q5U649 245 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 TMTC3Q6ZXV5 915 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 CMTR1Q8N1G2 835 aaKnown RBP16.47■□□□□ 0.23
MKS1-203ENST00000393120 CCDC82Q8N4S0 544 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 ZNF579Q8NAF0 562 aaKnown RBP16.47■□□□□ 0.23
MKS1-203ENST00000393120 ANKS1AQ92625 1134 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 SPTLC3Q9NUV7 552 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 PODXL2Q9NZ53 605 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 UBR3Q6ZT12 1888 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 DLEC1Q9Y238 1755 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 IL1R1P14778 569 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 PTPREP23469 700 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 NLRP12P59046 1061 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 ZRSR1Q15695 479 aaKnown RBP16.47■□□□□ 0.23
MKS1-203ENST00000393120 CRAMP1Q96RY5 1269 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 PHF20Q9BVI0 1012 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 MCM9Q9NXL9 1143 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 TUBE1Q9UJT0 475 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 CEP131Q9UPN4 1083 aa16.47■□□□□ 0.23
MKS1-203ENST00000393120 CCDC88AQ3V6T2 1871 aa16.46■□□□□ 0.23
MKS1-203ENST00000393120 ROBO3Q96MS0 1386 aa16.46■□□□□ 0.23
MKS1-203ENST00000393120 BAZ2AQ9UIF9 1905 aaKnown RBP16.46■□□□□ 0.23
MKS1-203ENST00000393120 NOLC1Q14978 699 aaKnown RBP eCLIP16.46■□□□□ 0.23
MKS1-203ENST00000393120 CCDC178Q5BJE1 867 aa16.46■□□□□ 0.23
MKS1-203ENST00000393120 DGKHQ86XP1 1220 aa16.46■□□□□ 0.23
MKS1-203ENST00000393120 MPNDQ8N594 471 aa16.46■□□□□ 0.23
MKS1-203ENST00000393120 NOL10Q9BSC4 688 aaKnown RBP16.46■□□□□ 0.23
MKS1-203ENST00000393120 CYP2D6P10635 497 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 TMC4Q7Z404 712 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 SPC24Q8NBT2 197 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 CTCFLQ8NI51 663 aaPredicted RBP16.45■□□□□ 0.22
MKS1-203ENST00000393120 KIAA1524Q8TCG1 905 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 KCNF1Q9H3M0 494 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 CD209Q9NNX6 404 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 KCNH3Q9ULD8 1083 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 V9GY48 417 aaPredicted RBP16.45■□□□□ 0.22
MKS1-203ENST00000393120 LAMB1P07942 1786 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 PLEKHA8P1O95397 391 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 KRT27Q7Z3Y8 459 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 CLIC6Q96NY7 704 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 GGA1Q9UJY5 639 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 FBXO2Q9UK22 296 aaPredicted RBP16.45■□□□□ 0.22
MKS1-203ENST00000393120 JAG2Q9Y219 1238 aa16.45■□□□□ 0.22
MKS1-203ENST00000393120 TSPY2A6NKD2 308 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 TPM2P07951 284 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 USP17L8P0C7I0 530 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 KRT2P35908 639 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 USP5P45974 858 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 EVX2Q03828 476 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 NR5A1Q13285 461 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 RCSD1Q6JBY9 416 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 OXER1Q8TDS5 423 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 SH3RF3Q8TEJ3 882 aaPredicted RBP16.44■□□□□ 0.22
MKS1-203ENST00000393120 ERCC4Q92889 916 aaPredicted RBP16.44■□□□□ 0.22
MKS1-203ENST00000393120 SHISA4Q96DD7 197 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 TCP11L1Q9NUJ3 509 aa16.44■□□□□ 0.22
MKS1-203ENST00000393120 SRPRBQ9Y5M8 271 aaKnown RBP16.44■□□□□ 0.22
MKS1-203ENST00000393120 MYH2Q9UKX2 1941 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 POLRMTO00411 1230 aaKnown RBP16.43■□□□□ 0.22
MKS1-203ENST00000393120 UFL1O94874 794 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 KIF5BP33176 963 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 DPCR1Q3MIW9 517 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 FAM47AQ5JRC9 791 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 KRBA2Q6ZNG9 492 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 FAM163AQ96GL9 167 aaPredicted RBP16.43■□□□□ 0.22
MKS1-203ENST00000393120 CNTNAP5Q8WYK1 1306 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 GPR75-ASB3A0A0A6YYF3 556 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 BMP15O95972 392 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 DDR1Q08345 913 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 CCDC186Q7Z3E2 898 aa16.43■□□□□ 0.22
MKS1-203ENST00000393120 SLC51AQ86UW1 340 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms