RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 TRIM58Q8NG06 486 aa12.84□□□□□ -0.35
VPS13A-205ENST00000376636 CLTAP09496 248 aa12.84□□□□□ -0.35
VPS13A-205ENST00000376636 ARHGEF9O43307 516 aa12.84□□□□□ -0.35
VPS13A-205ENST00000376636 SATB2Q9UPW6 733 aa12.84□□□□□ -0.35
VPS13A-205ENST00000376636 PDXDC1Q6P996 788 aa12.84□□□□□ -0.35
VPS13A-205ENST00000376636 CAPS2Q9BXY5 557 aa12.84□□□□□ -0.35
VPS13A-205ENST00000376636 CCDC138Q96M89 665 aa12.84□□□□□ -0.35
VPS13A-205ENST00000376636 GOLGA5Q8TBA6 731 aa12.84□□□□□ -0.35
VPS13A-205ENST00000376636 IFIH1Q9BYX4 1025 aaKnown RBP12.84□□□□□ -0.35
VPS13A-205ENST00000376636 TNNI2P48788 182 aa12.84□□□□□ -0.35
VPS13A-205ENST00000376636 CD2APQ9Y5K6 639 aa12.84□□□□□ -0.35
VPS13A-205ENST00000376636 GNGT2O14610 69 aa12.83□□□□□ -0.35
VPS13A-205ENST00000376636 RUNDC3BQ96NL0 473 aa12.83□□□□□ -0.35
VPS13A-205ENST00000376636 KCNA4P22459 653 aa12.83□□□□□ -0.35
VPS13A-205ENST00000376636 KIFC3Q9BVG8 833 aa12.83□□□□□ -0.35
VPS13A-205ENST00000376636 COPG1Q9Y678 874 aaKnown RBP12.83□□□□□ -0.35
VPS13A-205ENST00000376636 TRIM42Q8IWZ5 723 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 VEZTQ9HBM0 779 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 PAK1Q13153 545 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 MPRIPQ6WCQ1 1025 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 GNA14O95837 355 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 NCAPD3P42695 1498 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 TTC41PQ6P2S7 1318 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 VWA3AA6NCI4 1184 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 THAP12O43422 761 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 SERPINI2O75830 405 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 CYP7A1P22680 504 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 SUN1O94901 812 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 USP6NLQ92738 828 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 NECAB1Q8N987 351 aa12.83□□□□□ -0.36
VPS13A-205ENST00000376636 GARSP41250 739 aaKnown RBP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 CCNT1O60563 726 aaKnown RBP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 IWS1Q96ST2 819 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 ZBTB21Q9ULJ3 1066 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 IGSF3O75054 1194 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 POLE3Q9NRF9 147 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 RBM8AQ9Y5S9 174 aaKnown RBP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 SAR1BQ9Y6B6 198 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 EIF3CLB5ME19 914 aaKnown RBP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 TMTC3Q6ZXV5 915 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 PDZD4Q76G19 769 aaPredicted RBP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 POMGNT1Q8WZA1 660 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 EIF3CQ99613 913 aaKnown RBP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 KCNG1Q9UIX4 513 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 MAGEB6P1A0A0J9YX57 407 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 S100BP04271 92 aaPredicted RBP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 RNASE9P60153 205 aaKnown RBP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 ASPHQ12797 758 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 RAB3GAP1Q15042 981 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 TRIML1Q8N9V2 468 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 MIS12Q9H081 205 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 AMFRQ9UKV5 643 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 HDAC1Q13547 482 aaPredicted RBP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 SND1Q7KZF4 910 aaKnown RBP eCLIP12.82□□□□□ -0.36
VPS13A-205ENST00000376636 CSGALNACT2Q8N6G5 542 aa12.82□□□□□ -0.36
VPS13A-205ENST00000376636 TMCO5AQ8N6Q1 288 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 PARP1P09874 1014 aaKnown RBP12.81□□□□□ -0.36
VPS13A-205ENST00000376636 RFX1P22670 979 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 ANKLE2Q86XL3 938 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 CDKL2Q92772 493 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 ABTB1Q969K4 478 aaPredicted RBP12.81□□□□□ -0.36
VPS13A-205ENST00000376636 SPZ1Q9BXG8 430 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 AK9Q5TCS8 1911 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 NMIQ13287 307 aaPredicted RBP12.81□□□□□ -0.36
VPS13A-205ENST00000376636 LRRC8CQ8TDW0 803 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 ESYT1Q9BSJ8 1104 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 PAG1Q9NWQ8 432 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 NAIPQ13075 1403 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 EEF1B2P24534 225 aaKnown RBP12.81□□□□□ -0.36
VPS13A-205ENST00000376636 KRT81Q14533 505 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 SFMBT2Q5VUG0 894 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 TRIM50Q86XT4 487 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 PALMDQ9NP74 551 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 CSRNP1Q96S65 589 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 KIF14Q15058 1648 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 C11orf95C9JLR9 678 aaPredicted RBP12.81□□□□□ -0.36
VPS13A-205ENST00000376636 EFCAB13Q8IY85 973 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 F6X3S4 739 aa12.81□□□□□ -0.36
VPS13A-205ENST00000376636 HACE1Q8IYU2 909 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 ZFXP17010 805 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-205ENST00000376636 GRAMD4Q6IC98 578 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 NBPF5PQ86XG9 351 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-205ENST00000376636 NUDCD3Q8IVD9 361 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 BBOF1Q8ND07 529 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 ZBTB9Q96C00 473 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 CCDC61Q9Y6R9 512 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 APBA1Q02410 837 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 C16orf87Q6PH81 154 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 RAB44Q7Z6P3 723 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-205ENST00000376636 CCDC169A6NNP5 214 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 EFCAB14O75071 495 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 SDSP20132 328 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 RFC4P35249 363 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 PRPF38AQ8NAV1 312 aaKnown RBP12.8□□□□□ -0.36
VPS13A-205ENST00000376636 HDAC11Q96DB2 347 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 SKIP12755 728 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 LONP1P36776 959 aaKnown RBP12.8□□□□□ -0.36
VPS13A-205ENST00000376636 TRIM55Q9BYV6 548 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 TRIM15Q9C019 465 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms